RNA id: TU20564


Basic Information

Item Value
RNA id TU20564
length 2859
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G16556
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34096312 ~ 34100223 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNCTGGGACGCTCGgcactctgggatttagtgtttaaaACTGGAGGCTCAAATACCGTCTACATTAAAGAGCAATACACTTTGCACTGAAACGTATTTACGATATCTTAGTCTTATACCAGATATTGAAAAGTAGNNNNNNNNNNNNNNNNNNNNNNNNNgtagaaaacaaaagacatcaCTTACAAATATGATTGTTAGAAAATTAAGTGTTCATGTTGACGTATCTTTTCCCGTTTCCTCTAGTTGCTTTGGTTTCCCAGCGCATCGTCAATAACCgtgttacttctccctgtaCCATGATCCGATGAACATCGACAATAGAGCTTCATTTAAGTGTCCTAGATACTGTCCCTTATTATTGCTCTGTGGGAGAATGAActgcgttgcattattaaatacagtgtgcgtgtgtttaaATCTGTAGCCACTACATATCTATACCATGACACCTACAGCATGACACATACAGTCACAGCCTATGTATGTAGTTTCTAAAGAAAAactcatacatgtgtatataaatacggcTACGACACTCTGTGATCCATAACATACTCGAACAGTTTctccacaaattcagtgttagcatgttttctctgtatacctCCAGCTTgatcaatgtgcaaaataaaagagtCCCATATCAACAACATCCGCTTTTATTGACAATGAGATTCCTTTATATGCGCTTTCATGCGCTTGATCATGTCACCTGTGGGACATTGATACTTAATCAGCttggttttattgattgtttttggctttatatttattacgcgtatttgttttatatacacatatctaacacgtttgtttgattttctttatttttgacaCGTGATTTTGTGATCTATACACTTATGACTTTTTGGTTCAGCACGagtttattaattgattgatttcactGATTACCTTGTTAATAGGCTAGGCCATAAACCACAGCTTGCCGGTggtttcagtgcatttcaaatgaataaactGTAGGCTATCTATGCCAATGGTAGCAGAGTTTGAGAACAAACGTAATCCTAAAATATTCTGATCTtagtcaaaatataaaaactgcatAACAATAACTAGCCTACAACAAAATGAGGCTACCTCTGTATTGTGTGTTGGCTCTGTGCCGCCTGGAAAAGTCATTTCACAAACTTGTCCATTGATGCCTGGATCATGGGTTTTATCCAAAACCAAGTTCACTTTTTACTAACTTGCATGAGATTATTCTAGCTATCAAATTAAGACTAATCTATGTTTAGACTTTATTTAGTAGTGGCGACCGCTTATTGCGATCACATccatcagtttatttatttttctccatatgttgaaatgtatgaaaagaccCAAAATGAACATTATAAGCGAATTATTTAAACCAGCATTTGTATAGGAACGATTCTGTCCCAAGCGTTTTGATCCATATAGGCGGTTGATCCATATAACTGTGATCGCTGTGAGCATTGTCCACTATATTATGAAGAGACACTAGTCAGTCTGATACTTTCAGAAACAGAAATTCCTATGTATGTTTTATCAAGCTGTTTTGCTCCTAATAAACAGAACAGACACTgcatatttatgaataaatCAGGAAACATATATTAGTACACTTACACATCTTATTCAGTCCACTTGGGTCAGACATTTACACTGAAGTCATAATCATGCAGTTACAAAACAGTGTCTGTACTCCACTTATTCTTTCCTATCCTCAACTCCAAATCTACTTGTATTCACTGCCAGGGCTGAGGGACCTAGACCTAGGGAGAGGGTTGGAGTTCACCACTCATAACAAACTCACTGAGCAGTGTTTCAGTGTCCCCAGGCTGGGAGTGGGTTGAGAAAGAGTCCCCCTCCACACACCTCTGACCTCTCCAAGTGCTGTCCTCTTGATGTGGGGGTCAGGGCCGGCTAGCTCAAACCTTAACCttcacatttcagttaaagTAATCATAAAGGACCTGACCCCCCTCAAAAGATGCAGACCAGGGAGAGGCAGTGAAACCTCCAGCACAAGCAACAATGTATTTATCAACACAATGACCTgaggaaacaatcaaacagacaaCACCTAAGCCTCACTACAGCACTGCATGGTAGATGCAATGTCCTCACTCTGGTTTCCTGGCCATTCTTCTCTATCTTCTGTTCAAATGTATCCTCTAGCTGGCTGGTTATTGCCATTATGCAGCTTCAGAGGTGCATGAGAATAGCCAAGATCATGAACTCACCACACAGTTGCTGCTTTCTCTATAGTTGCAGATACTGAATGTTAAAGTTGAAAAATAGTCCAATCACtttatatctaatttaaaatggcTCTCTGTTTTTAATCCATTTTCAGATTTCTAACTGGTGGGTTTACAGTGACGCTGCAGTGCTTGTCCATCAGGGCTGATTACAGAGACACTGAACTGTAAGCTGTATATCACTTTTGCGAAGGTAAAATTCAGTGCCAATTATGTAGTTGTGAACCAATcctaaaagtacattttgttgtaaTGCATCAAATTACCATTGCAATAAACCTTTTGATGAAAAAGACTGTGCATCAATCTTTCAactgaaaactatttaaatctaatcaaattatttttgcCTTTTGAACAAGTTTTCTTTGCAGTGTGCATGAGACTCTGCATCTTTCTGTCATTCTTTCCCCCCCAATTCTGTCCAAGTGCTGGTGCTGTGGATGCTTGGAGGTGCTCAGAGGTACTTCTGTTCTTCATGAGGAGGGAGGTGGGGCTGACACCTGACACTGCTGCCCAGGTTACAGGATGACACAGGGGGGACGGCTGTTGGTGATCTTTTCTACCATCTCCCCGTCATGGGCTTTCTGAACGGCATTCATGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20562 lncRNA downstream 101052 33993190 ~ 33995260 (-) True G16554
TU20537 lncRNA downstream 289890 33771708 ~ 33806422 (-) True G16533
TU20523 lncRNA downstream 422755 33668596 ~ 33673557 (-) True G16522
TU20516 lncRNA downstream 434029 33659633 ~ 33662283 (-) True G16519
TU20508 lncRNA downstream 447872 33644209 ~ 33648440 (-) True G16511
TU20568 lncRNA upstream 698 34100921 ~ 34101206 (-) True G16560
TU20569 lncRNA upstream 1064 34101287 ~ 34101572 (-) True G16561
TU20581 lncRNA upstream 91249 34191472 ~ 34194310 (-) True G16567
TU20624 lncRNA upstream 196036 34296259 ~ 34300803 (-) True G16605
TU20660 lncRNA upstream 372113 34472336 ~ 34473547 (-) True G16635
AMCG00016908 mRNA downstream 87512 34000597 ~ 34008800 (-) True AMCG00016908
AMCG00016907 mRNA downstream 215634 33877103 ~ 33880678 (-) True AMCG00016907
AMCG00016904 mRNA downstream 500070 33582724 ~ 33596242 (-) True AMCG00016904
AMCG00016892 mRNA downstream 521016 33554101 ~ 33575296 (-) True AMCG00016892
AMCG00016895 mRNA downstream 576238 33513627 ~ 33520074 (-) True AMCG00016895
AMCG00016911 mRNA upstream 114676 34214899 ~ 34263010 (-) True AMCG00016911
AMCG00016931 mRNA upstream 991230 35091453 ~ 35096502 (-) True AMCG00016931
AMCG00016936 mRNA upstream 1135369 35235592 ~ 35245651 (-) True AMCG00016936
AMCG00016937 mRNA upstream 1173700 35273923 ~ 35312713 (-) True AMCG00016937
AMCG00016938 mRNA upstream 1295769 35395992 ~ 35399030 (-) True AMCG00016938
TU20442 other downstream 582733 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 665227 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 917429 33176076 ~ 33178883 (-) True G16356
TU20188 other downstream 1593060 32497507 ~ 32503252 (-) True AMCG00016859
TU20574 other upstream 6467 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 3657934 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 3927260 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 3954442 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 7116428 41216651 ~ 41217231 (-) True G17421

Expression Profile