RNA id: TU20581


Basic Information

Item Value
RNA id TU20581
length 2811
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G16567
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34191472 ~ 34194310 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaatcaagtaacTGAGGAAGAACAAACAGAACTGTAGGTTTGGGAAGTAAAATGGTTtcacatttgtcattttagcAGACAAAAAAATCCCCCCACCCATTGCTACATCGTGTGCAGttatataatgttacatttaaagcaGAGAACAGGTTTGCCTACTACTTGTCCTCCgagaaaggaaaaatgaaaagcacagacATCTAGGTCATAAGAATGGTTACATAAGACTGAGATGCCAATGAGTTCTTTGTGGAAGCCTAGACCCACTGCAGAGGTTAAGAGTTTGGAAAGCTGACTCTCACAAATTAATGGGGACGACTGGATTTATTAAACCTAACATTGTGGGACATCAGAAGCAGGTAGCTCAATGACTCTCAGTTcggcagggaaaaaaaaaatatatattttgcattctgATTTTACCTTCTGAATTTAGTTGTGAGCTTGTCacattcacataaaaaaaatgcatcttttccccttattaacaaaatgttaggCTTAAATGTATTAGATAGTACCAGGTCACTGAAAATCTCCGGTGTACATACTATATTAATGTGCAGTTCATTCATAGATCAGATCACCCATATTAACTGCTGGAAACAAATCTGTAATTGAGAAAATAGATGTAGATGCTTCAAAAAAATTACTGGGGCATCAAgtgtttatttagaaaaataaagtatagtTTTATCCAGATTTTTCTCTCAGTTGTATTGGCAGTATGTCTAACAGCCGATTACTTGCATGTTTTTTGCTTTCATATAAACCCTCTTTCAATAGGAATGTTTTGATTGCTTCCTTTATGCAGACCTCCGTCTTTTTAAATCTCATAGTACagtataagaaaaataatcaagccatacaaggaaataatacaactTCTCTTTATATAATATGGTTcttaaaataagacaaaaagacaatagaaaaatagtttttgaaaggacctaaaaacaaaaatcaaacattcATATACAATTCATCACTAAAGTCAACAGTCTCTGGCAATATGTCTGTAAAAGCTCCTACCCTTATTCagcaaacacttttttttttttttatgcttttctcTGGAAAAAAGATCCCAAAGTCCAccttcaaaagcaaaaatactCCCCACAATCCTTTTTTAATTCCtaaatttttaaattactgGTTATAATGACACTttcattcatataaatatatacatacacaatcaAAATTGGCAAGTAAAGCTCAAAGAGCAAccatatagaaaacaaataattcatgaacacattaaacaaaaagaaCATTTGCTTTTCAAACACAGGAATGAAAAATTTAAAAgttaacaaaaaaagcaaaacaatgtgtGCAAACATTAGCAGTAGACATGAATGACATCTccaattaaactttttttgggGTCTGGCACTGTggaatgttatatatataaaaatacagataaaacaCTTAGTTTGCATTATgtgaatatataaaattaactttaaacaAGTATGTGCCCTCACATTTTGCATGCCTGAACAATGtttttatgcatatatatatatatatatatacacacatttaaaaaacaaaaaaaggctgttttgcattttaacattcaaGTTCTCTCTGTCGACCGGAAAGTGCATAAAGTTGACTGTCCCTTCCCAAGAAAACATCTGTGAATCTTCCTTAAAAAGGTGGATCTGGACTTAAACTGAAAGGTGTGAGTCTTGATGCAAAGCAGTAGAAAGTGCAGTCTTACAGAAAAGGTTTGGGTTTAAAGCTCTTGAAATACAGCTTTTGTCCCAACTTCCAAAGCAATAACCCAACGTCCTTTCCTGGGCATGAAGTGTTCGTGGCAGTCTGCAGGCTATGCAACAAAACACTCCGAGCAAAAGCAGCATCGCTCACACGGATTTGGCTGAAAATCGggaggaaataataataatcataacaaacaaaaaaatgaacatcTTCCAAAAGTGTCAGGGCTATTAGCTTCCCAACCACAGACTCTCCTTCTCAAGGAACAGTCATATGTCTgatgtcagtttgttttaaatgggtGGAGGgggtaaaaaacacaaatagtaATAAAAGAATGTGTGCCCACTGGTCCATTCCCTGTGGTGAGAATTCCTATTACGTGGAAAATAGACATCTTCCTCTGTTGTACAGCTGCCTCAAAAATCACATCTTACGACCGACCAATGCATAACTAGATCTCATGTCCGGCAAGAAAAACTCACTGACTGTACGGTCAAGTATGCGTCtccaatcccccccccccctcctaaATCCATATGTCAAACATGGCCCTCGGTTTTACAGAGCATGAAGCTCAAAGAGCCAAGGCTGGGAGGCCACTCTCCTAGTCACACCACAGACATCCTGCCTGACTCATGCAGCCATGTGTGGAGAAGGGCCTTCGCCTCTTCAAAGTACAGTACTGCACcacaaagagaaaaaggaacgacaaaagaaaaaatgtccaGATTTCCATGTCAGATTGTCTGCTTCTTTCAAGTTAAATTAAGTCAGTTAAAAGGAGTTCAGCACACTAGTTCTTGCTGGATGTCAGCTCGGGCCACAAAAGGCTCATCAAAGGCGAAGGTGTTCCTCACGACCTTCATGTCGCTCTGGCTGGAGCAGAGGGTGTAAGAGGCCATGATGACCAGCTCCTGGGACTCCGAGTCTGGGCTCTCGGGCTCGGACTCCGACTGGCTGGTCTCTGCCTCCACCAAGGCTGGCAGCAGGTTGGCATGGGGGAGGCTGAGAGTAGAAGTAGACAGCCATGAGTGCTTCAGACAGTCATCAGCTGTGGCTCTCT

Function

GO: NA

KEGG:

id description
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20569 lncRNA downstream 89900 34101287 ~ 34101572 (-) True G16561
TU20568 lncRNA downstream 90266 34100921 ~ 34101206 (-) True G16560
TU20564 lncRNA downstream 91249 34096312 ~ 34100223 (-) True G16556
TU20562 lncRNA downstream 196212 33993190 ~ 33995260 (-) True G16554
TU20537 lncRNA downstream 385050 33771708 ~ 33806422 (-) True G16533
TU20624 lncRNA upstream 101949 34296259 ~ 34300803 (-) True G16605
TU20660 lncRNA upstream 278026 34472336 ~ 34473547 (-) True G16635
TU20680 lncRNA upstream 364269 34558579 ~ 34561068 (-) True G16650
TU20683 lncRNA upstream 402888 34597198 ~ 34599931 (-) True G16653
TU20684 lncRNA upstream 455643 34649953 ~ 34650174 (-) True G16654
AMCG00016908 mRNA downstream 182672 34000597 ~ 34008800 (-) True AMCG00016908
AMCG00016907 mRNA downstream 310794 33877103 ~ 33880678 (-) True AMCG00016907
AMCG00016904 mRNA downstream 595230 33582724 ~ 33596242 (-) True AMCG00016904
AMCG00016892 mRNA downstream 616176 33554101 ~ 33575296 (-) True AMCG00016892
AMCG00016895 mRNA downstream 671398 33513627 ~ 33520074 (-) True AMCG00016895
AMCG00016911 mRNA upstream 20589 34214899 ~ 34263010 (-) True AMCG00016911
AMCG00016931 mRNA upstream 897143 35091453 ~ 35096502 (-) True AMCG00016931
AMCG00016936 mRNA upstream 1041282 35235592 ~ 35245651 (-) True AMCG00016936
AMCG00016937 mRNA upstream 1079613 35273923 ~ 35312713 (-) True AMCG00016937
AMCG00016938 mRNA upstream 1201682 35395992 ~ 35399030 (-) True AMCG00016938
TU20574 other downstream 83531 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 677893 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 760387 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 1012589 33176076 ~ 33178883 (-) True G16356
TU20188 other downstream 1688220 32497507 ~ 32503252 (-) True AMCG00016859
TU21119 other upstream 3563847 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 3833173 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 3860355 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 7022341 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 8614401 42808711 ~ 42864616 (-) True G17842

Expression Profile