RNA id: AMCG00017424


Basic Information

Item Value
RNA id AMCG00017424
length 396
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00017424
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2674951 ~ 2683508 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGACTGGACGGCGTTTCTCGACTCGTCGAGTGCGGCCAGCGACTCCGAGGCCCACGGCGGCCTCCCTCCTGCAGCGCCGAGGATCCTGGAAAGCAACTTTGAGATCCAGGAGGAAGAATATGACCAACAGACTGAAGCTCTGAAGGAGGAGGTGGAATATCAGTGTGAAGGAttcttcaagaaaaataaagacacagtAAATGAGGAGCAGATCAATGTCCTGAAAACAAGCAAGTTCCGCAGCTCTCTGCAGCAGCTCATGGAAACCCTGAATGGCGGCACCCCACACTACGTGCGCTGTGTCCAGCCAAATGACCACAAGCACCCTCACAGGGTTTCTGAGGTCAGCCTGCACAACACGCACACTGAGACCTTCAGCTTCATCAGCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112419 lncRNA upstream 146150 2491907 ~ 2528801 (+) True G90149
TU112409 lncRNA upstream 170787 2461882 ~ 2504164 (+) True G90144
TU112325 lncRNA upstream 670345 2003038 ~ 2004606 (+) True G90070
TU112326 lncRNA upstream 670345 2004076 ~ 2004606 (+) False G90070
TU112288 lncRNA upstream 740167 1929142 ~ 1934784 (+) True G90042
TU112532 lncRNA downstream 553937 3237445 ~ 3237726 (+) True G90248
TU112571 lncRNA downstream 1214310 3897818 ~ 3898125 (+) True G90284
TU112621 lncRNA downstream 1628750 4312258 ~ 4312475 (+) True G90333
TU112625 lncRNA downstream 1646862 4330370 ~ 4330583 (+) True G90337
TU112626 lncRNA downstream 1701733 4385241 ~ 4390541 (+) True G90338
AMCG00017419 mRNA upstream 10398 2662686 ~ 2664553 (+) True AMCG00017419
AMCG00017416 mRNA upstream 25468 2646274 ~ 2649483 (+) True AMCG00017416
AMCG00017415 mRNA upstream 75981 2573489 ~ 2598970 (+) True AMCG00017415
AMCG00017413 mRNA upstream 214432 2427893 ~ 2460519 (+) True AMCG00017413
AMCG00017412 mRNA upstream 545439 2107891 ~ 2129512 (+) True AMCG00017412
AMCG00017422 mRNA downstream 3993 2687501 ~ 2694370 (+) False AMCG00017422
AMCG00017421 mRNA downstream 12601 2696109 ~ 2708643 (+) True AMCG00017421
AMCG00017420 mRNA downstream 25563 2709071 ~ 2712473 (+) True AMCG00017420
AMCG00017423 mRNA downstream 29649 2713157 ~ 2726827 (+) True AMCG00017423
AMCG00017427 mRNA downstream 592155 3275663 ~ 3481722 (+) True AMCG00017427
TU112033 other upstream 2463015 207586 ~ 211936 (+) True AMCG00017388
TU111991 other upstream 2576568 48007 ~ 98383 (+) False AMCG00017386
TU112484 other downstream 3912 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other downstream 3912 2687420 ~ 2695453 (+) False AMCG00017422
TU112690 other downstream 1979151 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 4046230 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 4046230 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile