RNA id: TU112571


Basic Information

Item Value
RNA id TU112571
length 308
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G90284
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 3897818 ~ 3898125 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCAGCCCAGTAGCGCCGGGCTCACTATTTGGCAAGGGCCGCACGCCGCGCGCGCGCGCACTCGCCGCCTGTGGTCTGGACTTTGTGGGAGGGGTCATTATTTGGCAGGGAGCGGCGAAGGGGGAAGCGGTTCCTAGATACCGACAGCAGCGTGTGGCTTCATTCACATCCAGCACAGAGAGAGCGGCGGACTTGAGTGTGCGAGAAAAAGGGAAGGACAGAGAAAGACCGTGTTGGGGGAAATAAGCAGGGCAATCCATCTCTGCAGCCGTTTCTGGGATACAGGACCTGTCATCGGATAAGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112532 lncRNA upstream 660092 3237445 ~ 3237726 (+) True G90248
TU112419 lncRNA upstream 1369017 2491907 ~ 2528801 (+) True G90149
TU112409 lncRNA upstream 1393654 2461882 ~ 2504164 (+) True G90144
TU112325 lncRNA upstream 1893212 2003038 ~ 2004606 (+) True G90070
TU112326 lncRNA upstream 1893212 2004076 ~ 2004606 (+) False G90070
TU112621 lncRNA downstream 414133 4312258 ~ 4312475 (+) True G90333
TU112625 lncRNA downstream 432245 4330370 ~ 4330583 (+) True G90337
TU112626 lncRNA downstream 487116 4385241 ~ 4390541 (+) True G90338
TU112680 lncRNA downstream 698666 4596791 ~ 4606571 (+) True AMCG00017445
TU112713 lncRNA downstream 799813 4697938 ~ 4710074 (+) True G90413
AMCG00017428 mRNA upstream 329098 3567260 ~ 3568720 (+) True AMCG00017428
AMCG00017427 mRNA upstream 416096 3275663 ~ 3481722 (+) True AMCG00017427
AMCG00017423 mRNA upstream 1170991 2713157 ~ 2726827 (+) True AMCG00017423
AMCG00017420 mRNA upstream 1185345 2709071 ~ 2712473 (+) True AMCG00017420
AMCG00017421 mRNA upstream 1189175 2696109 ~ 2708643 (+) True AMCG00017421
AMCG00017429 mRNA downstream 291123 4189248 ~ 4199454 (+) True AMCG00017429
AMCG00017439 mRNA downstream 485207 4383332 ~ 4384747 (+) True AMCG00017439
AMCG00017445 mRNA downstream 694677 4592802 ~ 4599888 (+) False AMCG00017445
AMCG00017449 mRNA downstream 730090 4628215 ~ 4633610 (+) True AMCG00017449
AMCG00017446 mRNA downstream 764500 4662625 ~ 4688223 (+) False AMCG00017446
TU112484 other upstream 1202365 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 1202365 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 3685882 207586 ~ 211936 (+) True AMCG00017388
TU111992 other upstream 3799435 69898 ~ 98383 (+) False AMCG00017386
TU112690 other downstream 764534 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 2831613 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 2831613 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 2831613 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 2831613 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000888 False 1560 mRNA 0.55 9 NC_007112.7 42225060 ~ 42883057 (+)
grasscarp (Ctenopharyngodon idella) CI01000049_09258155_09261544.mRNA True 2150 mRNA 0.38 5 CI01000049 9257387 ~ 9262131 (-)