RNA id: AMCG00017578



Basic Information


Item Value
RNA id AMCG00017578
length 288
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00017578
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12024533 ~ 12029958 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGGCACCAAGAGTgtgtggaggaggaagagaaagaaatggAGAGGCCAGAAAACTTCTGTTTGGCTGAACCATCTAGCATACATGTGGTGGCCTGCTCCAGGGATGGGCCTTCTTCTGTGGATAAAAGCCACATTCACCAGCTTATTGTAGACCTGGAGTGGAAGATCCCCAACCCTCCCTCTGATGGGCAACAGAGGTCGAAGATGTTCTCCTTCAAAGGCCCTGAACAGAAAGCAAGGAACTTCAAGAACTCTGCTAGTGGCTGGACGATCCAGATTACATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU114123 lncRNA upstream 48921 11975409 ~ 11975612 (+) True G91490
TU114113 lncRNA upstream 88194 11936101 ~ 11936339 (+) True G91481
TU114112 lncRNA upstream 88572 11935627 ~ 11935961 (+) True G91480
TU114003 lncRNA upstream 607793 11416521 ~ 11416740 (+) True G91387
TU114001 lncRNA upstream 609431 11408688 ~ 11415102 (+) True G91386
TU114194 lncRNA downstream 405786 12435744 ~ 12435984 (+) True G91545
TU114199 lncRNA downstream 460125 12490083 ~ 12490296 (+) True G91549
TU114261 lncRNA downstream 677352 12707310 ~ 12710716 (+) True G91597
TU114286 lncRNA downstream 835229 12865187 ~ 12891356 (+) False G91619
TU114285 lncRNA downstream 859682 12889640 ~ 12891356 (+) True G91619
AMCG00017577 mRNA upstream 28 12024256 ~ 12024505 (+) True AMCG00017577
AMCG00017562 mRNA upstream 145060 11867165 ~ 11879473 (+) True AMCG00017562
AMCG00017561 mRNA upstream 499519 11507876 ~ 11525014 (+) True AMCG00017561
AMCG00017560 mRNA upstream 621862 11390189 ~ 11402671 (+) True AMCG00017560
AMCG00017552 mRNA upstream 2129100 9893228 ~ 9895433 (+) True AMCG00017552
AMCG00017575 mRNA downstream 69032 12098990 ~ 12118066 (+) True AMCG00017575
AMCG00017576 mRNA downstream 99705 12129663 ~ 12130950 (+) True AMCG00017576
AMCG00017581 mRNA downstream 118311 12148269 ~ 12158241 (+) True AMCG00017581
AMCG00017580 mRNA downstream 143886 12173844 ~ 12178118 (+) True AMCG00017580
AMCG00017585 mRNA downstream 363322 12393280 ~ 12397753 (+) True AMCG00017585
TU114078 other upstream 144034 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 2441253 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 3270752 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 3335127 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 3891679 8132368 ~ 8132854 (+) True G90955
TU114568 other downstream 2006918 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 3047367 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 3082652 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 3837073 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 4105067 16135025 ~ 16135316 (+) True G92130

Expression Profile