RNA id: TU118334


Basic Information

Item Value
RNA id TU118334
length 695
RNA type TUCP
GC content 0.65
exon number 6
gene id AMCG00018021
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32601189 ~ 32605751 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACGGCATCACCCCGCTGCACGTGGCATCCAAGCGTGGGAACACGAACATGGTGCGCCTCCTACTGGACCGAGGAGCACAGATCGACGCCAAGACCAGGGATGGTCTCACTCCTCTGCACTGTGCGGCGCGCAGTGGACACGACCCGGCCGTGGAGCTGCTCCTGGAGAGAGGGGCACCCATGCTGGCCCGGACCAAGAACGGGCTGTCCCCGCTCCACATGGGCGCGCAGGGGGACCACGTGGAGTGCGTCAAGCACCTGCTGCAGCACAAGGCCCCGGTGGACGACGTCACGCTGGACTACCTGACCGCGCTGCACGTGGCGGCACACTGCGGACACTACCGCGTCACCAAGCTGCTGCTGGACAAGAGGGCCAACCCCAACGCCCGCGCACTGAACGGCTTCACTCCTCTTCACATCGCCTGCAAAAAGAACCGTGTCAAAGTCATGGAGCTGCTCGTCAAATACGGGGCGTCCATTCAGGCCATCACTGAGTCCGGCCTGACCCCCATCCACGTGGCCGCCTTCATGGGGCACCTGAACATCGTCCTACTGCTGCTGCAGAACGGAGCGTCTCCCGACGTCAGCAACATCcGTGGGGAGACGGCTCTGCACATGGCGGCGCGGGCGGGACAGGTGGAGGTTGTGCGCTGCCTGTTGAGGAACGGGGCACTGGTGGATGCCAGGGCCAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118233 lncRNA downstream 256335 32345250 ~ 32346583 (-) True G94791
TU118171 lncRNA downstream 406312 32192183 ~ 32196606 (-) True G94747
TU118071 lncRNA downstream 774118 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 861259 31741224 ~ 31741659 (-) True G94655
TU118024 lncRNA downstream 980540 31621600 ~ 31622378 (-) True G94622
TU118408 lncRNA upstream 50279 32656030 ~ 32661641 (-) True AMCG00018020
TU118424 lncRNA upstream 184028 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 242515 32848266 ~ 32848466 (-) True G94936
AMCG00018016 mRNA downstream 124066 32461594 ~ 32478852 (-) True AMCG00018016
AMCG00018015 mRNA downstream 173353 32425025 ~ 32429565 (-) True AMCG00018015
AMCG00018008 mRNA downstream 215232 32381550 ~ 32387686 (-) True AMCG00018008
AMCG00018009 mRNA downstream 221429 32380512 ~ 32381489 (-) True AMCG00018009
AMCG00018006 mRNA downstream 242102 32347495 ~ 32360816 (-) True AMCG00018006
AMCG00018020 mRNA upstream 52678 32658429 ~ 32665115 (-) False AMCG00018020
AMCG00018023 mRNA upstream 74836 32680587 ~ 32684608 (-) True AMCG00018023
AMCG00018025 mRNA upstream 82630 32688381 ~ 32690871 (-) True AMCG00018025
AMCG00018024 mRNA upstream 89209 32694960 ~ 32713623 (-) True AMCG00018024
AMCG00018022 mRNA upstream 161494 32767245 ~ 32776080 (-) True AMCG00018022
TU118287 other downstream 146508 32455085 ~ 32456410 (-) True G94835
TU118217 other downstream 307485 32294020 ~ 32295433 (-) False AMCG00018007
TU118225 other downstream 326546 32271694 ~ 32276372 (-) True AMCG00018004
TU118224 other downstream 339387 32262776 ~ 32263531 (-) False AMCG00018000
TU117930 other downstream 1944425 30627988 ~ 30658493 (-) True G94543
TU118371 other upstream 42713 32648464 ~ 32652684 (-) False G94887
TU118375 other upstream 42713 32648464 ~ 32652684 (-) True G94887

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU471589 True 3627 lncRNA 0.48 17 CI01000300 3772434 ~ 3796061 (-)