RNA id: TU118287


Basic Information

Item Value
RNA id TU118287
length 1222
RNA type TUCP
GC content 0.62
exon number 3
gene id G94835
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32455085 ~ 32456410 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAGGGGCTCTCGGGGTGCAGCTTCTCGCAGAAGACCCAGAAGTGGTAGAAGTCCTCGGGCAGGGGCAGCCGGTACAGAcgctcctccagctcctggcGCAGCTCCGGGGGCACCGCCGCCTCCTCCACGGGCTGCCGGGCCTTCTTCAGCGCCCCGCTCTCCGCCTGCTAGGGACCAAGCAAGGACAGGCCAGGCTGGCACCCGGCtccactacacacactacagctCTGTGAAGGGTTTGCGGAAACACCGATTCAGCTAAAGGGAACTgatcaatactaataataataacgagtTTAATTCCACTGCACGTCACAGGGACCTGACATCACATGATCGACGCATCTGTACATGAGTGACATGGCCGTCTGCAGGCGAGCAGGTCCTGCAGTGCCCTGTGTGCGGTGTGGtgtggtgctgtgtgttgtgttgtgttgtgttgtgttgtgtgctgtatgctgtgtgtggtgctgtgcggtgtgtggtgctgtgctgtgtgttgtggtgtgtgttgtgctgtatgttgtgtgtgctgtgttgtgctgtgttgtgtgtgctgtaatGCTGGTCAGCCGGTACAATGAGACACAAAACTGCAGCTGCACATGTGCGCGGCTCTGACGTCACCACCAGCACCGACTCCTGTCATTCCTGGAGGGGAGCCCCGTGACGTCACCCTCCGGGGAAGACGAGGAGGTGAAACACAAGCCGGTACcgaacacaacaacaacaataataataacaataataataacaacattaataacaacaacacgcTCTCCGGCTGCCTGTCCGGTCCGAAGCGGCTCACAGCGGCTCGCAGGTCCGCGGCGGCGGCGCGTCGGTGCCCCAGACTGGACCTGGTGGCGACCAGCCCGACCCGCAGCGCAGCCGGCGCGGACACTGGCGCTGAGTCCCGGCGCTTCATCCGCAGCCCCGGCCGGCGCCGGTCTCGGGGTCGGTTCTCCATACCTGCGCTGCCGATTTGGATTTTCGTTTCCCGCGCCCGGCCATCCCTGCTCTCCCGGCTCCTCTGCGACCCCGGAGACGCACACACGGCCGGGGTTAAGAGAGCGGCGGTGGGGTCTGCCCGTCGGCCCGCAGCGCCCCCTGCGGCCCGGAGGACCAGCGCTGCCAGAGCCGGGCCAGTGCTCAGTCCCACAGGCAGGGGGCGACAGCGTCCGCCAAGTGCGACACGTAGCTCTCGCTGTAAGTATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118233 lncRNA downstream 108502 32345250 ~ 32346583 (-) True G94791
TU118171 lncRNA downstream 258479 32192183 ~ 32196606 (-) True G94747
TU118071 lncRNA downstream 626285 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 713426 31741224 ~ 31741659 (-) True G94655
TU118024 lncRNA downstream 832707 31621600 ~ 31622378 (-) True G94622
TU118408 lncRNA upstream 199620 32656030 ~ 32661641 (-) True AMCG00018020
TU118424 lncRNA upstream 333369 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 391856 32848266 ~ 32848466 (-) True G94936
AMCG00018015 mRNA downstream 25520 32425025 ~ 32429565 (-) True AMCG00018015
AMCG00018008 mRNA downstream 67399 32381550 ~ 32387686 (-) True AMCG00018008
AMCG00018009 mRNA downstream 73596 32380512 ~ 32381489 (-) True AMCG00018009
AMCG00018006 mRNA downstream 94269 32347495 ~ 32360816 (-) True AMCG00018006
AMCG00018007 mRNA downstream 147005 32285485 ~ 32308080 (-) True AMCG00018007
AMCG00018016 mRNA upstream 5184 32461594 ~ 32478852 (-) True AMCG00018016
AMCG00018021 mRNA upstream 144779 32601189 ~ 32605750 (-) True AMCG00018021
AMCG00018020 mRNA upstream 202019 32658429 ~ 32665115 (-) False AMCG00018020
AMCG00018023 mRNA upstream 224177 32680587 ~ 32684608 (-) True AMCG00018023
AMCG00018025 mRNA upstream 231971 32688381 ~ 32690871 (-) True AMCG00018025
TU118217 other downstream 159652 32294020 ~ 32295433 (-) False AMCG00018007
TU118225 other downstream 178713 32271694 ~ 32276372 (-) True AMCG00018004
TU118224 other downstream 191554 32262776 ~ 32263531 (-) False AMCG00018000
TU117930 other downstream 1796592 30627988 ~ 30658493 (-) True G94543
TU117547 other downstream 3181917 29269235 ~ 29273168 (-) True G94238
TU118334 other upstream 146508 32602918 ~ 32605751 (-) False AMCG00018021
TU118371 other upstream 192054 32648464 ~ 32652684 (-) False G94887
TU118375 other upstream 192054 32648464 ~ 32652684 (-) True G94887

Expression Profile