RNA id: AMCG00019747



Basic Information


Item Value
RNA id AMCG00019747
length 894
RNA type mRNA
GC content 0.58
exon number 6
gene id AMCG00019747
representative False

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42556540 ~ 42572080 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAGGCATCCTAAGTATGTTCCCCGAGCCGTGCTGATTGACCTGGAGCCGGGGACGATGGACAGCGTCCGGTCTGGACCGTTTGGACAGCTCTTCAGACCCGACAACTTCATTTTCGTCTTTCAGCCCCTCTGGGAGAGTGGTGTCCTCATCCAGACCGCCAGTCCCTTCCACAAACTCTTCGAGCTTATGCGTGCGCTCATAGGCCTCGTTGATGAGGCAGCGCACCTCGGAGTCAATGAGCCAGGCGGTGGCCTCGCTGTAGGGCTTCTCCAGCACCATCTCCCCTTGCCGGGGGATGTCGAAGGACACCTGGCCCACCTTCTCATTCATCCCAAACTGGACAATCTGCAGGAACAGGGGGGAGTGGGAGCCgCCAACATTTCCCATGTCTCCATTTTCTGTATCGCTGTACACAGACTGAAGCACGCAGACAGAGAGGACATGACAGCCCTGCTGAGCAGGAGGGAGTGTGCAGACCTGTGCATAGGCACTCTGGGTGACCTTGCGCAGGTCGTCTTGGGCCCCCGTGGTGATCCGCCCAAAGAAGATCTCCTCCGCCACTCTCCCTCCCAGCATCATGCACATGCGGTCCAGCAGCTGCTCCTTGGTGTACAGTTGACGAACTCCATGATCTCCATCTTGGCCTCCTCGCAGCCGGCTACATCCTTGAACTTGATGTCGATCTCGTCCCTCAGGACTTTGGCCGTGGTCTCCCCCACGCTGAAGAGGCCTCCCATGCCCCGGCCGGTGCGACCCCCCCCGGCTGGACCCCTCCGCAGAGTGTACAGCAAGAAGCCAATGATCAGTACAGTGGGCAGCATGCTCAACAGGAAGGAgctgaaggacagagagagggagagagactttAATCACCTTTTTTTctacaaatga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45992 lncRNA upstream 12773 42544225 ~ 42544526 (+) True G36816
TU45982 lncRNA upstream 24590 42532017 ~ 42532709 (+) True G36807
TU45920 lncRNA upstream 245127 42311548 ~ 42312172 (+) True G36754
TU45910 lncRNA upstream 286377 42214186 ~ 42270922 (+) True G36744
TU45886 lncRNA upstream 519929 42037159 ~ 42037370 (+) True G36720
TU46019 lncRNA downstream 10440 42582520 ~ 42582758 (+) True G36842
TU46021 lncRNA downstream 12778 42584858 ~ 42585152 (+) True G36844
TU46022 lncRNA downstream 30729 42602809 ~ 42603022 (+) True G36845
TU46031 lncRNA downstream 53145 42625225 ~ 42625818 (+) False AMCG00019751
TU46114 lncRNA downstream 296322 42868402 ~ 42868634 (+) True G36895
AMCG00019746 mRNA upstream 4626 42545447 ~ 42552673 (+) True AMCG00019746
AMCG00019745 mRNA upstream 30091 42508602 ~ 42527208 (+) True AMCG00019745
AMCG00019742 mRNA upstream 171651 42374468 ~ 42385648 (+) True AMCG00019742
AMCG00019740 mRNA upstream 690822 41691571 ~ 41866477 (+) True AMCG00019740
AMCG00019736 mRNA upstream 1199084 41348441 ~ 41358215 (+) True AMCG00019736
AMCG00019751 mRNA downstream 52650 42624730 ~ 42627105 (+) True AMCG00019751
AMCG00019750 mRNA downstream 82567 42654647 ~ 42662493 (+) True AMCG00019750
AMCG00019753 mRNA downstream 145853 42717933 ~ 42740339 (+) True AMCG00019753
AMCG00019755 mRNA downstream 388597 42960677 ~ 42962499 (+) False AMCG00019755
AMCG00019758 mRNA downstream 689864 43261944 ~ 43271192 (+) True AMCG00019758
TU45249 other upstream 5041272 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 6257752 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 6493454 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 6493454 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 7705976 34840316 ~ 34851323 (+) True AMCG00019641
TU46131 other downstream 388576 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 689814 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 758212 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 1480994 44053074 ~ 44056603 (+) True G37105
TU46693 other downstream 2707375 45279455 ~ 45339619 (+) False G37372

Expression Profile