RNA id: AMCG00020644


Basic Information

Item Value
RNA id AMCG00020644
length 1233
RNA type mRNA
GC content 0.55
exon number 6
gene id AMCG00020644
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 27281615 ~ 27286072 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCCCTGAGAAGAGGCCTGTAGACCCCCCAGATGGAGGCTATGGGTGGTTTGTGCTCCTCTCCACTTTCCTTGTCTTTGGACTGACGTTTGGGGGGGTTTTCTATGTGGAGATTCAAGGCTGCTTCTCCACCACGGCTACCAGCACCTCATGGATCACTTCCATAGCAGTGGCTACTGTCCACATCACTGCTCCTTTCGGGACTGCCCTGAGTGTGCGCTTCGGTCATCGTGCGGTGGTGATGGCAGGGGGTGCTCTCAGTGCCCTGGGGATGATTGCAGGTGCCTTTGCACAGAACCTCTTCCTGCTGTATGTGACTGTGGGATTCATCTCAGGTTTTGGATATGCCTTGACGTGGACTCCCACAGTGACCATGCTGGGCAGATACTTTGAGAAGAGACGGCCAATGGCCAATGGCTTTGCAAGTGCTGGGGAGTGTGTGGTCACCTTCCTCATCACCCCCACATCCCAGCTCCTGGTGGACTGCTACACGTGGCATGGGGCCATGCTGATTCTGGGAACGATCGAACTGCATCTACCGATCCGACTTCGCAAAGACGAGCCCGAATTAACGATGGAGATGGAGGAGCGCTCTGAGGGAAAAAAGGCCCAGCAAACACCTGGCAGGGGCTGGAGACCAGGTGGAGTCATCCACTACGTAGACTATAGGCTGATAAGCAATTGGCGCTTCATGGTCTACACAATGTTTGGAGTCTTTGCCGCCCTGGGCTTCTTCGCCCCAGCTCTATTTCTGGTGCCTTACGCTCGGAGCAAAGGGATAGCCGAATACCAAGCCACCTGGCTCGTGTCCATATCGGCCATCTCTGACCTCTCTGGAAGGCTGACCTGCGGCTGGTTTGCTAACCTGCGTCTTGTGAAGAAGATCCAGCTGCTGTTCGTCACTGTGTCGCTCCTAGGTACGATTCTCCTTCTCTGGCCCCTGGCAACCTCCTTTCTTCACCTCGTCATCTGCAGTGTGGTCTATGGTCTTGTGTTTGGCTCCACGGTGGCCATACACATCACTGTACTGGCGGACATCGTGGACACGGCACAGCTGGGAAGCGCACTGGGCTTCTTCAGGCTCATTTGCAGCAGTGGTGGATTACTGGGGCCCCCTGTTGCAGGAGTATTTATCGACAAGATGAGCAGCTATGGGACTGGCTTCCTGATGGCCGGCGTGGCTCTGATTGTGTCCGCTCTGTTCCTCCTTTTACTGCACCAAATGAACAGGAGG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80932 lncRNA downstream 45293 27236083 ~ 27236322 (-) True G64708
TU80850 lncRNA downstream 535792 26745549 ~ 26745823 (-) True G64632
TU80848 lncRNA downstream 549327 26731435 ~ 26732288 (-) True G64630
TU80847 lncRNA downstream 551504 26729855 ~ 26730111 (-) True G64629
TU80845 lncRNA downstream 645827 26635588 ~ 26635788 (-) True G64627
TU80977 lncRNA upstream 134294 27420366 ~ 27420646 (-) True G64745
TU81054 lncRNA upstream 875530 28161602 ~ 28187431 (-) False AMCG00020657
TU81047 lncRNA upstream 899537 28185609 ~ 28187431 (-) False AMCG00020657
TU81049 lncRNA upstream 899537 28185609 ~ 28239074 (-) False AMCG00020657
TU81115 lncRNA upstream 1030697 28316769 ~ 28323164 (-) True G64847
AMCG00020647 mRNA downstream 12172 27259852 ~ 27269443 (-) True AMCG00020647
AMCG00020639 mRNA downstream 32670 27247899 ~ 27248945 (-) False AMCG00020639
AMCG00020635 mRNA downstream 173335 27102401 ~ 27108280 (-) True AMCG00020635
AMCG00020627 mRNA downstream 839162 26415975 ~ 26442453 (-) True AMCG00020627
AMCG00020628 mRNA downstream 888564 26372786 ~ 26393051 (-) True AMCG00020628
AMCG00020643 mRNA upstream 120883 27406955 ~ 27408112 (-) True AMCG00020643
AMCG00020645 mRNA upstream 134976 27421048 ~ 27425477 (-) True AMCG00020645
AMCG00020646 mRNA upstream 149597 27435669 ~ 27474732 (-) True AMCG00020646
AMCG00020649 mRNA upstream 236552 27522624 ~ 27523548 (-) True AMCG00020649
AMCG00020650 mRNA upstream 313142 27599214 ~ 27711704 (-) True AMCG00020650
TU80934 other downstream 31939 27246014 ~ 27249676 (-) True AMCG00020639
TU80656 other downstream 1362985 25898428 ~ 25918630 (-) False G64470
TU80657 other downstream 1376004 25898428 ~ 25905611 (-) True G64470
TU80433 other downstream 1951045 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 1978634 25298802 ~ 25302981 (-) False AMCG00020590
TU81066 other upstream 940463 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 1039235 28325307 ~ 28328312 (-) False AMCG00020661
TU81155 other upstream 1502508 28788580 ~ 28796956 (-) True G64882
TU81300 other upstream 2095243 29381315 ~ 29405636 (-) True G65000
TU81316 other upstream 2243847 29529919 ~ 29533117 (-) False AMCG00020685

Expression Profile