RNA id: AMCG00020647


Basic Information

Item Value
RNA id AMCG00020647
length 881
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00020647
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 27259852 ~ 27269443 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctctctctctctctctctctctctctgagccaGACATGTGCTCTCCATGCAGACTGAATTAACTGACTTCTCAGACTACCTGATGCAAGTTCAGGATCAGACTTCCAGTagggttttgtgttgttttccctCTCCCTGTAGGAATGTTAACAGAGAGAGAACTCATGTATGAGTCCTAAACAATAGAACTTTGCAGGACGGACGGAGGGTTGGCTGCAGGACTTCAAGAGCtcagcattatttatttctggtcTGCAAAAGACTTCTGACTTAAAAAGAAacctgaaaatacataaaaaaaagaaactacaaCACTGAAACAGAGTAAAGGAGTATGCAGGAGAATGTCTCAAACAAGGTGCTGGTCACAGTGCTGTGTacactgctgcttttgtcagacACTGGATATGCCCGGAGAATAAGTAAAAGGGGACTACACCAGAAAGTGGGAGACAAATATGACGACTATGAGTACCCAAACCAGTCCCAGTCGGCGCAGTACCAGAAGAATGACCGCTGCCCCCCGCCGCCCCAGATGCTGCCCGAGCGGGCGTGCGAGGTGCCCAGCTGCCGCTCCGACTCAGAGTGTGAGCGACACAAGCGCTGCTGCTACAACGGCTGCATCTACGCATGTCTGGAGTCTGTGCAGCCGCCCCCGGCGGAGGCCTGCAGCACCACGGAGGACGGCGACGAGCCCCTGCACTGCCCCACGGGGTATGAGTGCCACATAATCAACCCCGGGAACCCAGTCGCCGGCATCCCGAACCGCGGCCAGTGCATCAAACAGCGCGGCAACTCAGGTTCTGTTAACATCAGCCTTTTCTTTCCAGATGGACGCAGTTTACGGCATAAATACTTCAAAGATTACAAGGATTACCTA

Function

GO:

id name namespace
GO:0043086 negative regulation of catalytic activity biological_process
GO:0052547 regulation of peptidase activity biological_process

KEGG:

id description
K23635 WFDC1; WAP four-disulfide core domain protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80932 lncRNA downstream 23530 27236083 ~ 27236322 (-) True G64708
TU80850 lncRNA downstream 514029 26745549 ~ 26745823 (-) True G64632
TU80848 lncRNA downstream 527564 26731435 ~ 26732288 (-) True G64630
TU80847 lncRNA downstream 529741 26729855 ~ 26730111 (-) True G64629
TU80845 lncRNA downstream 624064 26635588 ~ 26635788 (-) True G64627
TU80977 lncRNA upstream 150923 27420366 ~ 27420646 (-) True G64745
TU81054 lncRNA upstream 892159 28161602 ~ 28187431 (-) False AMCG00020657
TU81047 lncRNA upstream 916166 28185609 ~ 28187431 (-) False AMCG00020657
TU81049 lncRNA upstream 916166 28185609 ~ 28239074 (-) False AMCG00020657
TU81115 lncRNA upstream 1047326 28316769 ~ 28323164 (-) True G64847
AMCG00020639 mRNA downstream 10907 27247899 ~ 27248945 (-) False AMCG00020639
AMCG00020635 mRNA downstream 151572 27102401 ~ 27108280 (-) True AMCG00020635
AMCG00020627 mRNA downstream 817399 26415975 ~ 26442453 (-) True AMCG00020627
AMCG00020628 mRNA downstream 866801 26372786 ~ 26393051 (-) True AMCG00020628
AMCG00020625 mRNA downstream 1043039 26199871 ~ 26216813 (-) True AMCG00020625
AMCG00020644 mRNA upstream 12172 27281615 ~ 27286072 (-) True AMCG00020644
AMCG00020643 mRNA upstream 137512 27406955 ~ 27408112 (-) True AMCG00020643
AMCG00020645 mRNA upstream 151605 27421048 ~ 27425477 (-) True AMCG00020645
AMCG00020646 mRNA upstream 166226 27435669 ~ 27474732 (-) True AMCG00020646
AMCG00020649 mRNA upstream 253181 27522624 ~ 27523548 (-) True AMCG00020649
TU80934 other downstream 10176 27246014 ~ 27249676 (-) True AMCG00020639
TU80656 other downstream 1341222 25898428 ~ 25918630 (-) False G64470
TU80657 other downstream 1354241 25898428 ~ 25905611 (-) True G64470
TU80433 other downstream 1929282 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 1956871 25298802 ~ 25302981 (-) False AMCG00020590
TU81066 other upstream 957092 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 1055864 28325307 ~ 28328312 (-) False AMCG00020661
TU81155 other upstream 1519137 28788580 ~ 28796956 (-) True G64882
TU81300 other upstream 2111872 29381315 ~ 29405636 (-) True G65000
TU81316 other upstream 2260476 29529919 ~ 29533117 (-) False AMCG00020685

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025321 True 681 mRNA 0.54 6 NC_007129.7 14595805 ~ 14614014 (+)