RNA id: AMCG00020646


Basic Information

Item Value
RNA id AMCG00020646
length 1518
RNA type mRNA
GC content 0.49
exon number 13
gene id AMCG00020646
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 27435669 ~ 27474732 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgctGACTAAGAAGGTCAAGTCcacagaaatggagaaagagGTTGTTGGAGGGGAGGATTTTGTAAGTGTCGTTCAAGTAAAGATTAAGAGAGAGCCAGAAGAGGAGGGCTTTGCTGTAAACAAGAAGGCCAAAGGGAAGAAAAGACCCAGGGAGGAGGAACTGGTTGAGGGGCCCTCTTCTGAAACacaaggaaagaaaatcaagaAAGTGAAGATGGAGTTTGAAGAGGGAGAGCCAAGGCCAGAAATGCAGAGtcagaaaatgaaaggaaagaaaatgaaggcaaagaaagagagggaggaacaACCACTGTCTCCCAGAGGAGGAAGTAAGAAAAAGAAGAGCAGAGAGGAGATTGTGGCAGCGAAAGCTTTgaagattaaaaagaaagaggaggaggagcagcagcgCTGGCGATGGTGGGAAGAAGAGAAGTATGAAGACGGCATCAAATGGAAATTTCTGGAGCACAAAGGACCCTTCTTCCCTCCCGAGTACCAGCAAATTCCCGACAACGTGAAGTTTTATTATAATGGCCAACCCATGCCTCTCAGCCGAGCCTCTGAAGAAGTGGCCGTCTTCTTTGCGCAGATGTTGGACCACGAATACACGACGAAGGACGTGTTTCGGAATAACTTTTTTAAGGACTGGAGGAAGGAAATGACTTTGGAGGAGAGGATGGTGATCACAGACCTGGAAAAATGTGACTTTGGTGAGATTTTCACAATGCACAAGGAGCGAGTAGAAGCAAGGAAGATCATGAGTAAGGAGGAGAAGCAGATAATCAAAGAGTCCAATCAAAAAATATTGGAGATGTATGGCTACTGTGCTTTGGATCACCACCAAGAGAGGATTGGGAACTTCAAAATTGAACCCCCTGGTCTGTTCAGAGGCAGGGGGGACCACCCCAAGCAAGGCATGCTAAAGAAGCGCATCCAGCCGGAGGATGTCATCATCAACTGTAGCAAAGATTCAAAGATCCCAGAGCCGCCGCTCGGGCACAAATGGAAGGAAGTGCGCCACGACAACATGGTTACTTGGCTGGCAAGTTGGACAGAGAATGTGCAAGGATCCTGCAAGTATGTCATGCTCAATGCCAACTCCAAGCTCAAGGGAGAGAAGGACTGGGAAAAGTACGAGGTGGCTCGGAAGCTGAAGAACTGCGTGGAAGCTATACGGGCACAGTATCAGATGGACCTGAAATCCAAGCAGATGGGCATCCGCCAAAGAGCCGTGGCACTGTACTTCATAGACAAGCTGGCGCTGAGAGCAGGCACGGAGAAGGAGGAGGGCGAGACAGCTGACACAGTGGGCTGCTGCTCCCTGAGGGTGGAGCACATCACACTGCACCCAGAACTGGACGGAAACCAGTACGTGGTGGAGTTTGACTTCCTGGGTAAAGACAGCATCCGCTACTACAACAAGGTCCCTGTGACAAAAACGgtCTTCAAAAATGTGAAACTTTTCATGGAGAACAAGGAGGGAGGTGATGACCTGTTTGACAGACTGAATGCA

Function

GO:

id name namespace
GO:0006265 DNA topological change biological_process
GO:0005694 chromosome cellular_component
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80977 lncRNA downstream 15023 27420366 ~ 27420646 (-) True G64745
TU80932 lncRNA downstream 199347 27236083 ~ 27236322 (-) True G64708
TU80850 lncRNA downstream 689846 26745549 ~ 26745823 (-) True G64632
TU80848 lncRNA downstream 703381 26731435 ~ 26732288 (-) True G64630
TU80847 lncRNA downstream 705558 26729855 ~ 26730111 (-) True G64629
TU81054 lncRNA upstream 686870 28161602 ~ 28187431 (-) False AMCG00020657
TU81047 lncRNA upstream 710877 28185609 ~ 28187431 (-) False AMCG00020657
TU81049 lncRNA upstream 710877 28185609 ~ 28239074 (-) False AMCG00020657
TU81115 lncRNA upstream 842037 28316769 ~ 28323164 (-) True G64847
TU81159 lncRNA upstream 1383257 28857989 ~ 28858354 (-) True G64886
AMCG00020645 mRNA downstream 10192 27421048 ~ 27425477 (-) True AMCG00020645
AMCG00020643 mRNA downstream 27557 27406955 ~ 27408112 (-) True AMCG00020643
AMCG00020644 mRNA downstream 149597 27281615 ~ 27286072 (-) True AMCG00020644
AMCG00020647 mRNA downstream 166226 27259852 ~ 27269443 (-) True AMCG00020647
AMCG00020639 mRNA downstream 186724 27247899 ~ 27248945 (-) False AMCG00020639
AMCG00020649 mRNA upstream 47892 27522624 ~ 27523548 (-) True AMCG00020649
AMCG00020650 mRNA upstream 124482 27599214 ~ 27711704 (-) True AMCG00020650
AMCG00020651 mRNA upstream 277462 27752194 ~ 27786025 (-) True AMCG00020651
AMCG00020652 mRNA upstream 320524 27795256 ~ 27857618 (-) True AMCG00020652
AMCG00020653 mRNA upstream 388743 27863475 ~ 28035409 (-) True AMCG00020653
TU80934 other downstream 185993 27246014 ~ 27249676 (-) True AMCG00020639
TU80656 other downstream 1517039 25898428 ~ 25918630 (-) False G64470
TU80657 other downstream 1530058 25898428 ~ 25905611 (-) True G64470
TU80433 other downstream 2105099 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 2132688 25298802 ~ 25302981 (-) False AMCG00020590
TU81066 other upstream 751803 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 850575 28325307 ~ 28328312 (-) False AMCG00020661
TU81155 other upstream 1313848 28788580 ~ 28796956 (-) True G64882
TU81300 other upstream 1906583 29381315 ~ 29405636 (-) True G65000
TU81316 other upstream 2055187 29529919 ~ 29533117 (-) False AMCG00020685

Expression Profile