RNA id: AMCG00020652


Basic Information

Item Value
RNA id AMCG00020652
length 348
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00020652
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 27795256 ~ 27857618 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGGTAATATCCAGCGAAATGCCGGAGACCAACATTTTCCGGCTGACTGGTAAAGGAGCCGATCTGGACCCCAAAGGCGTGTTCAGCATCAACCGCAAAACAGGAGAAGTACTGGTCAGCCGGGCTCTGGACCGTGAGGCGATCGCTGTGTACCATATGCAAGTTGAGACGACGGACTTAAGTGGGAAGATCGTGGAGGGGCCAGTCGCCCTGGTTGTGTCCGTCATCGATCAGAATGACAACAGACCCATTTTCAAGGAAGGGCCGTATTTTGGGCAGGTGTACGAGGGCTCCCCCACAGGTATGAGGTTCTTTGCACTGGAGGGGCTGGTGGCGGatttctaa

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80977 lncRNA downstream 374610 27420366 ~ 27420646 (-) True G64745
TU80932 lncRNA downstream 558934 27236083 ~ 27236322 (-) True G64708
TU80850 lncRNA downstream 1049433 26745549 ~ 26745823 (-) True G64632
TU80848 lncRNA downstream 1062968 26731435 ~ 26732288 (-) True G64630
TU80847 lncRNA downstream 1065145 26729855 ~ 26730111 (-) True G64629
TU81054 lncRNA upstream 303984 28161602 ~ 28187431 (-) False AMCG00020657
TU81047 lncRNA upstream 327991 28185609 ~ 28187431 (-) False AMCG00020657
TU81049 lncRNA upstream 327991 28185609 ~ 28239074 (-) False AMCG00020657
TU81115 lncRNA upstream 459151 28316769 ~ 28323164 (-) True G64847
TU81159 lncRNA upstream 1000371 28857989 ~ 28858354 (-) True G64886
AMCG00020651 mRNA downstream 9231 27752194 ~ 27786025 (-) True AMCG00020651
AMCG00020650 mRNA downstream 83552 27599214 ~ 27711704 (-) True AMCG00020650
AMCG00020649 mRNA downstream 271708 27522624 ~ 27523548 (-) True AMCG00020649
AMCG00020646 mRNA downstream 320524 27435669 ~ 27474732 (-) True AMCG00020646
AMCG00020645 mRNA downstream 369779 27421048 ~ 27425477 (-) True AMCG00020645
AMCG00020653 mRNA upstream 5857 27863475 ~ 28035409 (-) True AMCG00020653
AMCG00020658 mRNA upstream 279612 28137230 ~ 28147847 (-) True AMCG00020658
AMCG00020657 mRNA upstream 321103 28178721 ~ 28191734 (-) True AMCG00020657
AMCG00020659 mRNA upstream 393255 28250873 ~ 28265191 (-) True AMCG00020659
AMCG00020661 mRNA upstream 467419 28325037 ~ 28328300 (-) True AMCG00020661
TU80934 other downstream 545580 27246014 ~ 27249676 (-) True AMCG00020639
TU80656 other downstream 1876626 25898428 ~ 25918630 (-) False G64470
TU80657 other downstream 1889645 25898428 ~ 25905611 (-) True G64470
TU80433 other downstream 2464686 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 2492275 25298802 ~ 25302981 (-) False AMCG00020590
TU81066 other upstream 368917 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 467689 28325307 ~ 28328312 (-) False AMCG00020661
TU81155 other upstream 930962 28788580 ~ 28796956 (-) True G64882
TU81300 other upstream 1523697 29381315 ~ 29405636 (-) True G65000
TU81316 other upstream 1672301 29529919 ~ 29533117 (-) False AMCG00020685

Expression Profile