RNA id: AMCG00021215


Basic Information

Item Value
RNA id AMCG00021215
length 5715
RNA type mRNA
GC content 0.46
exon number 48
gene id AMCG00021215
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 9390527 ~ 9455880 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAAGCCAAAAATCATCGAGCCTCTAGATTATGAAAATGTCATCCTCCAAAGGAAGACACAGATCCATAGTGACCCTCACAGAGACCTTCTGCTGTGTCCCATGGACGATGTCTCGGAATCAACTATTCCTCGTCAGAGGAGAACTGTATGTTCCTCGGTGCCCCAGAATGCAGAGAAGGAAGCCAGAAGCTTGTTTGCCAAAGAGTGTATAAAGATGTACAACATGGACTGGCACACTGTCAACTACAAATATGAAGCTTACTCAGGAGATTTCAGAATGCTTCCCTGCAAAGGCCTCAAGACCGAAAAGCTGCCAACCCatgtttttgaaattgatgAAGATTTAAAAGATGAGgACTCCTCTTCACTGTGTTCTCAAAAGAGGGAAATAATGAAGCAGGGCTGGCTGCACAAGGCCAACATGAACAGCAGCCTTTCTGTCTCCATGAGGgcatTCAAGAGAAGGTACTTCTACTTATCTCAGCTGCCTGATGGCTGCTTTACTCTTAATTCATACAAGgatgagaaaaactgtaaagacACCAAGGGATCAATCTACCTGGATTCTTGTCTTGATGTCGTTCAGTGCCCTAAAATGCGTCGGAATGGGTTTGAGTTAAAGATGCAAGATGGATACAGTCATTATCTGGCAGCAGAGAGCgagcaggagctggaggagtGGGTTACAACACTGAAGAGGGTCATCCAGAGCAGCACAGAGCTTCTGCTTCAGGAGAAGAGGAATGGCGAAACAATCGACTACTCTTTGGATGACGAATCCAGCAGTCAAGGGAAATCGGAAAGTGTGATGGGGGGTTTGGGAAGGAGCATGCACTCTGAGCTAATGAAGtatgCCAGGGAAACAGACCAGCTAAACAAAATTAACAGGAATGACAGCAGACACAAACTGTTCACATTGGATCCTGAAACGCagAGGCTAGACTTCTCAGGAATTGAGCCAGACGTGAAGCCATTTGAGGAGAAGTTTGGCCGTCGGATCATGGTCAATTGCCATGATTTAATATTTACCCTGCAAGGCTGTGTGAATGAAAAAAGTGATGGGGTTCCCACAAATGTGGAGCCTTTCTTCATCAGCTTGGCCTTGTTTGATGTcacaaaaaactgcaaaatatcgGGGGATTTTCATGTGGACCTTAACCCACCATGTGTACGGGAGATGCTGTCTGAGGTGACAGGGCAACTGGCCAGAGAGCAGAATGCAGGCGCGTCCAGGGCCAGCTTGCCAGTCCAGCCTAGAGTGTCTGAGTCACTGCTGCAGTTCCCCAAACAGgggatTTTCTCCATTacaaacccacacacagatATTTTCCTTGTGGCCAGAATCGAGAAAGTGTTACAGAATGGGATCACTCATTGTGCTGAGCCATACATCAAGACCTCAGATGTGAACAAGACTGCTCAGAAAGTACTGAAGGCTGCCAAGCAGACATGCACGAGGCTTGGGCAGTACAGGATGCCATTTGCCTGGGCTGCCAAGCAGGTGTTTAAAGACAATCAAGGGAGCCTGGACCTGGACGGAAAGTTCTCTCCTCTGTACCGACAAGACAGCAGCAAGCTCTCCAACGATGACCTCATCAAATTTCTTCTGGATATTAAGAAGCCAGAGAAGAGTAAACTCCAGATCATCCCTGGCCAATTAAACATCacaactgaatgtgtgccgccAGATTTCTCCaATTCCATTACCACATCCTATATCCCGGTGAAGCCGTTTGAGGAAGAATGTGAGAAGGTCTCGGTAGAAATTGAAGAATTTGTTCCCGAAGAAGCGAAATACAACTATCCTTACACAGTTTACAAAAACCGTCTCTATATTTATCCCTTGCAATTGAAGTACGACAACCAAAAAACATTCGCCAAGGCAAGGAACATAGCAGTGAATGTGGAATTCAGGGATTCTGATGAAGAGACAGATGAAGTTTTGAAGTGTATCTATGGCAAACCTGGCGGACCTCTGTTTACGACCAGCGCCACGGCGGCTGTACTGCACCACAACCAGAACCCCGAGTTCTACGATGAGATTAAAATTGAGCTGCCAATACATCTCCATGCAAAACACCATGTACTCTTCACCTTCTACCACATCAGCTGTGAATACAACACCAAGGCCTCCACCAAGAAACGAGACAGCGTGGAGACACTGGTCGGTTACACATGGCTTCCCTTGATGAAAGATGGCCGGGTTGTGTCACTAGAGCAGCAGTTACCAGTGTCTGCAAACCTTCCTGCTGGTTACCTGAATGATAAGAACGGGGAGTCAAAAAAGCCTTTGCCAGACATCAAATGGGTTGACAACGCAAagccactttttaaattaagaagcCACGTGGTATCCACCATATATACCCAGgacacacatttacataactTCTTCCAGCACTGTCAGATGATCCAGTCAGGGTCACAGGAGAGCCCAGCGGatcttgtgaaatatttaaagTGCCTTCATGCAATGGAGACTCAAGTCATCATCAAGTTCTTACCCACAATCCTCATCCAGCTGTTTCAAGTCCTCACTATGGTGACAAAGGAGCACCTTGAGATTGCGGTGAATTCAACAAGGTTGTATGTCTTTGTCACAAATAAGTCACCATCTTCAAATTCCTGGACAACTCACGAAGTTCTGGCCACTGCTGTGACTGCTATCCTCAAGCAATCGGCTGACTTTCTCACCATTAACAAGCTACTGAAGATGCCCAGAGCTCAGCGGTTCCCTGACACATACCATCAAGCCCTGCAGTCACTGCTCTTGGCCATAATTCCACACATCACTATTCGCTATGGAGAGATTCATGAGGAAGCAAGAAATGTCAATGTGGCCTTGGCCAGCTTCATCAAGCGCTGCTTTACATTCATGGACAGAGGATTTGCATTCAGCCTGGTAAATGACTACATCTGTGGTTTTAGCCTCAAAGATCCCAAGGTGCTCACAGAGTTCAAGTTTGATTTCCTGATGACAGTCTGCAACCATGAGCACTACATCCCTCTCAATCTGCCTATGACTTTTGGAAGAACCAAACTGCAGAGAGTTCAAGACCTGAATCTTGAGTACAACCTGACTGAAGAGTACTGTAGGAACCACTTCCTTGTGGGGCTTTTGCTGAGGGAGGTAGCTGTGGCACTTCAGGACTGTCCTGAAATACGGCACCTCTCTGTAGCTGTGCTGAAGAACCTCATGATCAAACACGCGTTCGATGACAGGTATACAGTGTACAAGAACCAGCAGGCAAGAATCTCTCTTCTTTACATGCCACTGTTTGAGCTGCTATATGAAAACATCACCCAGCTCTCCATGAGTGACCCATTGGGAGTGCATTCAGGGCTTCCAATGAGTGCTTCCAGAGATGACTTGATGTTCACCTATCCCTCAAACCAGAACAGCAGATCAAATACCATGATAGACAAAGATCTGGGATTCAGTGCTCAAAATGGTCATGTGGTGAAGCGAGAAGACTCTCGAGGGTCACTCTTCATCGATCACAGCGCACCAGACACCACAGATGGGaTGCATAGAAGAAGTTCAACAATAAGCAGAGTGCCACCGTTGAACAGGTTCAGCCAGTATGAGGTCAAAAGTCTTTTGATGTGTTTTCTGCACATTGTAAAAACTATATCAGAAGATACTTTGCTGGCTTATTGGAACAAAGTTTCTGCGCAAGAAGTAATGAACTTCCTCTCCCTGCTAGAAAATGCGtctgaaatgcagtttaatatCAAGTTCTCAaCCCAACTCCTAGATAACGATGGTCACAACCCACTGATGAAGAAGGTATTTGACATATACCTGACTTTCCTTAAGATGGGACAATCTGAGGCTGCTCTTAAACACGTCTTTGCATCTCTCAGAGCATTCATCAGTAAGTTTCCCTCTGCAGTGTTCAAGGGCAGGGTGAACCTGTGCGCTGCCTTCTGCTACGAGGTCCTGAAATGCTGCACCTCCAAACTCAGCTCCAATAGAGGCGAGGCCGCAGCCCTTCTCTACTTCCTCATGAGAAACAACTTTGAATTCACCAAAAGGAAAACCTTCCTACGGACACATCTACAGATCATCATTGCGGTGAGTCAACTCATCGCAGACGTAGCTCTCACAGGGGGGTCCCGCTTCCAGGAATCTCTTTCCATCATCAACAACTTTGCCAACAGTGACAAGGCCATGAAGGCAACTGTATTTCCTTCTGATGTGAAGGACTTGACAAAGAAAATCCGAACGGTGCTCATGGCCACAGCTCAGATGAAGGAGCATGAGAGGGACCCAGAGATGCTCGTGGACCTGCAGTATAGCCTGGCCAAGTCCTACGCCAGCACCCCAGAGCTGCGTAAAACCTGGCTTGAGAGCATGGCCAAAGTACACGTCAAGAACGGTGACTTCTCGGAGGCCGCGATGTGCTATGTCCATGTAGCTGCCCTAGTGGCAGAGTACCTGCACAGGAAAAAAACTTTTTCCAGTGGCCTCTCAGCATTTAAAAAGATCACCCTAAATATTGATGAAGAATCTGCCATGAAGGAGGATGTGGGCATGCAAGAAGTATACTACACTGAGGAGATCCTTGTGGAGCTGCTGGAGTTGTGTGTGGATGGTCTGTGGAAAGCAGAACGATACGAATTAATAGCAGAGGTGTCCAAGCTCATTCTCCCCGTCTATGAAAAGCGTCGTGAGTTTGAGAAACTCAGTCACCTGTACAGCACTCTGCATCGGGCTTACTCCAAAGTAATAGAAGTGATGCACACAGGTCGAAGGCTGCTGGGGACATTTTTCAGAGTCGCTTTCTATGGACAAtctttTTTTGAAGAGGAAGATGGGAAAGAGTATATCTACAAGGAGCCCAAGCTGACAGGACTTTCAGAGATCTCTCAGAGACTTCTGGGTCTCTATGGTGACAAGTTTGGTGCTGAAAATGTGAAGATTATACAAGACTCAAATAAGGTTGATTCCAAACAGATAGATGCCAAGTATGCATACATCCAGGTTACCTTTGTCAAGCCATATTTTGATGAGAAAGAACTGTCAGACAAAAAAACTGACtttgagaaaaaacacaacataaacaggtttgtttttgaGACTCCGTACACCTTGCTTGGGAAGAAGCACGGGGGAGTGGAGGAGCAGTGCAAACGGAGAACCGTTCTGACAACCACAAATACTTTCCCCTATGTGAAGAAGAGGATTGCGGTCGTGTATGAGCACCAGATTGACTTGAAACCCATCGAGGTGGCCATTGACGAGATGAAGGACCGGACAGCCGAACTGCAGAAATTATGTTCGACTGCAGAGGTGGACATGATCCAGCTACAACTCAAACTCCAGGGCTGCGTCTCAGTGCAGGTAAATGCTGGACCTATGGCTTATGCAAGGGCATTTCTGGATGATACTAAATCCAGCaagtatgcaaataaaaaagtaaaagagcTGAAGGAGATATTCAGGAAATTTGTTCAAGCCTGCAGCATTGCCCTTGACTTCAATGAGCGATTGATCAAAGAGGACCAGTTTGAGTAccatgaaggactgaaatccaaCTTCAAAGATATGGTCAAGGAGCTGTCAGATATCATCCATGAGCAGATTTTCCAGGAGGATATGATGCGTTCCCTGCTCCAGAATTCCATGCATGTTTTCCGAGCGATCAGTGGCACTTCAGCAGACCTGGGATATGGATCACCATGCCACTCCTTCCAAACAACCTTGTAA

Function

GO: NA

KEGG:

id description
K21852 DOCK6_7_8; dedicator of cytokinesis protein 6/7/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105216 lncRNA downstream 549868 8836275 ~ 8840659 (-) False G84332
TU105215 lncRNA downstream 549868 8836308 ~ 8840659 (-) True G84332
TU105217 lncRNA downstream 549868 8836308 ~ 8840659 (-) False G84332
TU105177 lncRNA downstream 649114 8741161 ~ 8741413 (-) True G84311
TU105173 lncRNA downstream 688609 8701579 ~ 8701918 (-) True G84307
TU105443 lncRNA upstream 631824 10087704 ~ 10090475 (-) True G84514
TU105548 lncRNA upstream 957295 10413175 ~ 10414481 (-) True G84603
TU105563 lncRNA upstream 1018537 10474417 ~ 10477459 (-) True G84614
TU105608 lncRNA upstream 1386852 10842732 ~ 10843021 (-) True G84651
TU105624 lncRNA upstream 1695106 11150986 ~ 11151438 (-) True G84667
AMCG00021214 mRNA downstream 3167 9377192 ~ 9387360 (-) True AMCG00021214
AMCG00021213 mRNA downstream 22874 9341453 ~ 9367653 (-) True AMCG00021213
AMCG00021210 mRNA downstream 156328 9233425 ~ 9234199 (-) True AMCG00021210
AMCG00021207 mRNA downstream 268098 9084763 ~ 9122429 (-) True AMCG00021207
AMCG00021206 mRNA downstream 316141 9068018 ~ 9074386 (-) True AMCG00021206
AMCG00021216 mRNA upstream 27538 9483418 ~ 9514021 (-) True AMCG00021216
AMCG00021223 mRNA upstream 377638 9833518 ~ 9834063 (-) True AMCG00021223
AMCG00021222 mRNA upstream 393080 9848960 ~ 9860715 (-) True AMCG00021222
AMCG00021221 mRNA upstream 408811 9864691 ~ 9879985 (-) True AMCG00021221
AMCG00021220 mRNA upstream 481724 9937604 ~ 9945176 (-) True AMCG00021220
TU104623 other downstream 2843950 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 4639292 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 6708765 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 6931148 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 7412559 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 3071213 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 3263984 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 4171455 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 4414059 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 4594094 14049974 ~ 14051897 (-) True G85115

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000344_01024079_01086671.mRNA False 4535 mRNA 0.44 30 CI01000344 1023396 ~ 1086671 (-)