RNA id: AMCG00021572


Basic Information

Item Value
RNA id AMCG00021572
length 5706
RNA type mRNA
GC content 0.55
exon number 29
gene id AMCG00021572
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21836023 ~ 21855452 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGGTCAGGTCCGCTCTCTTCTCCCGGGCTGTGGCTCTCGCTCGCCGGTGCTGGTCAATGGCTTCGTTATTAGGATCATCAATGAAAACATCCTGAACTCTGATTTATCTCCATTTCCAGCACTGATGGCACCTCCCGTCTCTGCGCAAACTTTAACCGTGTTGGGTCTGTTGTTATCCACGACTGTCTACTGTCAGACAGcagcccctgAGTGCAGCCCAGAAGGACACCAGATTCTCCAGAGCCCCTACCGCAGTGTCCACTTCGACTCCCAGAGACTCCAGCAGTCGGCCATCCAGGATTTGATATGTGACCACTCCTTGAGCCCGGGCTGGTACCAGTTTCAGATATTCGATAAGCCGGCCAGCATGCCGACCAAATGTGTGGAGGTGAACCGCTGTGGGACGCAGGCTCCCGTGTGGCTGTCTTTAGCGGACGGGGAATCTCTGCCCCGACCCCTGGAGGTCAAGCAGCTCACAGCCTGCGCCACTTGGCAGTTCTTCCTCAGCTCCACGAAGGACTGCTGCCTCTTCCGCATTCCCATCAGTGTCAGGAACTGCGGGGACTTTTACGTGTATCTGCTGCAGCCGACGCAGGGATGCATGGGTTATTGCGCCGAGGTTGTTTCTGGCACAAAGACGTCTGACTGTGGTCCAGAAGAAACAGATATTGATGGGATATGCAGAGcTAAACAGCCGCCTCCCCCATCCATTCCTGAAATCATGGCTGAGCTTTCTGGCGAAAATATTTACCTCAAGTGCTCCTTCGATGGTCATAATGGAAACAGCTCTTTGGGGTATGTTGTGGCTTGGTCCAGACTTTCACCCAGTGGGACCAAAGAGGAGCTCAAACAGGAGACCACCGTGCAAACCTTCTCCTTCATTGAACTGGACGGTATCAACCTGCGCCTGGGAGACAAGATTTACTGCCTGAGCGCCAGCTTCTTCCTGGACTCCCCCGATGTGAAGGGCGCAGCGGTGGAAAGCAAGGAGTTCTTCACTGGTATCCAGCTGAGTCCTGAGGTTTCGTCTGTTTCAGAAGATGGTAAGGAGTATAAGTTAAAAGTTGAAAGCACGGTACCCATTCCCTGCAACGCCGACGGGAAAGACATTGAACACTGTAAACTTACCCTACATCTGAACACAGTCAATGAAGGTGAGAAACACCTTGGCCCAAACCTGGTCCTGTCCTCCTGTCGAGTCGATCTGCTTCAGGGTCCCTGCCGCAACAGCAGCTGCGCCTCGACCGCCGTCCATTTCACCGCAGTGACGGACTTCGTGCAGGACGGGGACAGAGTGACCGAAATCACCGTCAAACCCATCGAGAGTAAGAACTTCTTATGGAGCGGTTACATCCCACAAGGTGTTCAGATTAAGGTTAAGGATATTCCCTCTGCCTACTGCTACGCATTTACAGACCCTCACATCATTACATTTGACGGCAGGAGATTTGATAATTATCAGACCGGGACCTTTGTGTTCTACCGGAGCATGGCGCGGGAGTTCGAGGTTCACGTCCGCCAGTGGGACTGTGGGAGTCTGCATCACCCGGCCTCGTGTGTCTGCGGCTTCGTCGCCCGTGAGGGAGGGGACGTCATCGCCTTTGATATGTGCAACGGACAGCTGAGAGAGACCCGGCCACACCTCTCAGTGAAGAACAGGGACCTGGTCAGCAACAACATCCAAATCGCCGAGTCATACCAAGGAAGGAAAGTGACAattacattttcaacGGGAGCTTTTGTTCGTGCCGATGTCGGCGAATGGGGAATGAGTTTAACCTTCAGGGCCCCGAGCTCCGACTATGGCCAAACACAGGGCCTGTGTGGGACTTTCGATGGTGATCCTGAAAACGATTTTCACAAAGCTGGAGGCGATTCTGTGCCACAAGATGAGTCAGGATTTATCGATGAATGGAGAGTGCCTCCTGGGAAGAGTTTGTTTGACAGCGTACCGCACTATGAACACTCTCGACGCAAGAGACATTACTGCAACTGTGAACGAGAGCCTCTGGTCGCTCCTCAGTCAGTAAACAAGCCTACAATCCCTCTGGAAGCCGTGGCTGGATCCTTGTGCCTTAAAGGTGAAAATGTAAGGCTCTCAACTTTAATACCTGCCCTGGATATCACGGCAGAATACATCCACTCAGTCGAGCTGCTCCGGGGTTTGGAGAGACGCGAGGCCGAGAGCAAAATGGAAAAACCTTCTCCCGGCAGGAGACTCCACAAGCAGGGCCTGCTCAGTCAAGAAGGACACCTTGGGAGAAGCAGACGGAGGCGCCAGGGTTATTATGAATATAGCTCAAGCCTCCCGTACCAGAGTCTCAGCCAGACCGACTTGGAAGGATTCAGCTATTTCTTCCCAGAGGACCATGAGGACGATACACTCTCTCATGTCCCGCCTTCCTGGCCGACCCCCTCAGGGCTGTCTGAGTCTCGAGCCACACAACTATGCCACCATACCATCGCCAACTCCAGCATCGGCACGGGCTGTGCCACCCTCCTGGGCCCCAGAGTGCGGGACGTGGTCAGCATGTGCGTCTCAGATGTGCAGCTCAAGGACGACCTCAGCTGGTTGGGAGCCACCCTGGCGTTGTTGGAGAACGAATGTGAGAGGAAGCTGTTGGAGGACGGTGGCCCTGGGGAGCCAGCTGGGGACATCCTGTCTTTTCTGAAGTGTCCCAACCTGTGCAGTGGAAATGGGAAGTGTGCCGagtgggggtgtgtgtgcttCTCCGGGTTTGGTTCCTACGACTGCAGTGTTTTATCTGATCAGATTCCAGAAATCACTGAGCTGGAAAACGGCGGACTTTGTGACGTCCGACAGTACGACTGCACCTCCGTACGGGTCTTCGGTCAGGGTTTTAAGGACTCGTTTGAGCTGAAATGCGAAGTCGTGAATGAAAAGTTCTCCGGAGGCGAGTGGACTCTGGGTAATCCTCAGTTCACAGCAGCGACCTTCTTAAGCAACAGCGTTTTGGATTGTCAGCTACCACCCGAGAGCGGGCAGCCATCCGACTCTGTGGACATGGATGTAGTGGATGACAAGCCTATTGCCCGGTGGCACATTAAGGTCTCCAACGATGGCTACGGGTTCAGCGACGCAAAGGTCTTGACGTTGTTTGACGGAGCCTGTCACATATGTCAACCCAACGCCGAAGCCCTCTGCACGTTGAAAGAGAAGACATGTAACATCGATGGTCTCTGCTATGGCGAGGGGTACGTGAATCCCACCAGCCCGTGTCTCATGTGCAGACCGGACTCGTCCAAGTTCTCATGGTCAATCACTGAAAATAACGCACCTCCCGTATTCCAACCAGTACAAGACCTCCAGACCTTCAATGGTGAAAACTTTGTATACCAGTTTCTGGCCTCTGACCCTGAGGGCTCAGCCGTCCTGTTCACGTTGGAGTCGGGGCCCAAAGACGCAGTTCTGTCCCCGGCCGGGCTGATGATCTGGAAAGTCATGTCAAACACGCCACAGACATTCGAGTTTGCTGTATCTGATGACTGCAATGCTGAAACCAGGGCCTTTGTGAAGGTGACAGTGCGGCCCTGCGATTGCTTAAATGGCGGATCGTGTGTCACAAACATTAACTTCCCCCCTGGAAGTGGGCAgtacctgtgtgtctgtcccctCGGGTTTGAAGGAGAGAAGTGCGAAGCCAACATTGATGATTGTAAGTCCGACCCATGTAACCGGGGCAGATGTGTGGACGGGCTGAACTCCTATTCCTGTGAGTGTCCTTCTGGAGTACAAGGTACTGACTGTCAGGTAGACATTGATGAATGCGCCTCCAGTCCCTGCTTCCCCCGAGTCGAGTGTAACAACACTTTTGGTTCCTACGTCTGTGGATCCTGTCCGCCGGGCTTGTTTGGAGACGGAAGAACTTGCAGAAATGTCTCTCTTGGGCTCCAGCTCGCTTTCCAGGGCCCCCCAGCAGCTGCTCCAGCAGACCCTGTTTCCCAGGGGTGCAGTGCTTTGACCGGAGCCCCCCAGAGGCTGGCTTTACCTGTGGATACTGCCCCCCTGGACTCACGGGGAACGGTCAGACCTGCAGCCGACTCCCACTGCCCGTTACCTTCCAAACCAACCATCTTTTCAGGACAAAGGGCATCAACCACGACAGCCAACGAAACAGCAGTTCCAGCTAGAACTGTCTCTACGGCGGGAGTGAAACTTGAAAAGGAAAGGCCATCAGACTCAGGCAGGACAATTGAAAACCACTCATCCGTTCACAGATCTCCAGCTCACACCTCCTCTACTCACAGCAAGGTCCCCAGGCCAGAACAAAGACCTGTTGTGCAAAGCAAAGGAGCAACTTCCTCTTCAGGGGACCAGACTTTACAGCCCAAATGGTCCTTTGAAGCTGAGAGCGACAGAACCCTTTCAAGTAGCAAGAAAGTGTCACCAAGCGACACCAAGAAGGACAATAACCCCAGGAGTAGAATTGCACAAGAAAAAGGCATCCCAAACTCTGGAGGTCCTCCACTTCGCAGGGGGCGTCTGGAGCGACTGGGGACGTCCGACGTTGTCGAGCCACCGGAGCTGTTTGAGCCCAAAGGAGAGACTGCCACCGTGTCATCTGTGGTGACCTGCACCCAATCTCCCTGCTACCCTGGGGTTCCCTGTGAAGCGACTCAGACGGGGACGTTCAAGTGTGGCCGCTGTCCGTACGGATACTCCGGAGATGGAATAAACTGCAAAGCTGTGTGCCGATATCCCTGTGGCCAAAACATGGAGTGCTCTCTGCCAAACACCTGCCGGTGCAAACCAGGATACACCGGCTACAGCTGCCACATCGCTATGTGCCGCCCGGACTGTAAGAACCAGGGGAAGTGCATCCAGCCTAACGTGTGTCGCTGCGCCGCGGGATACAGCGGCCCGACGTGCGAAGAAGcGAACTGCACCCCCTCCTGTCAGCACGGCGGGACCTGCCTGGCCCGCAACCTCTGCACCTGCCCTTACGGATACGTTGGGCCAAGATGTGAAACGATGGTTTGCAACAGACACTGTGAAAACGGGGGAGAGTGCGTTTCCCCCGATGTCTGTAAATGTAAGGCAGGCTGGTACGGACCAACGTGCAGCTCAGCTGTGTGCAGTCCGGTGTGCTTCAATGGGGGTGCGTGTATCAAGCCCAATGTCTGTCTCTGCCCCAGTGGGTTCTACGGCTCTCAGTGCCAAATCGCCGTTTGCAGTCCTCCTTGTAAGAATGGAGGCCACTGCATGCGCAACAACGTCTGCTCCTGCCCAGAAGGCTACACCGGGAAGAGATGCCAGAAAAGTAAGAGACTCCACAGCTTCATTCGGCTGAGCTTTTCATTTTCCCTGTTTCCCCCAGTACAGGAGACGGTAAAGAGGCTGATCGTGCGGTTGGCGTTTGCTGTGGTAAAATGTTTTCCCTGTGTGACTTTTTCAGGTGTCTGTGACCCAATGTGCATGAACAGGGGGAAGTGTGTCGGCCCCAATCTGTGTTCGTGCTCTTCTGGGTGGAGAGGGAAAAGATGCAGCCAACCGGTCTGCCTGCAGAAATGTCGAAACGGGGGCGAGTGTGTGGGACCCAACACGTGCCACTGCCTAGTGGGGTGGGAGGGTCTGCAGTGTCAAACGCGTAAGTCTCCGCAACTGTGCTGTCGTAGTCCTGGTCCCTGTCGGATGAATGGgattttgtgtttcattcagAAGAACCATCCTACGAACCACTGA

Function

GO:

id name namespace
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function
GO:0019199 transmembrane receptor protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108491 lncRNA downstream 50889 21784876 ~ 21785134 (-) True G86925
TU108475 lncRNA downstream 164708 21666402 ~ 21671315 (-) True AMCG00021569
TU108455 lncRNA downstream 319789 21516032 ~ 21516234 (-) True G86893
TU108442 lncRNA downstream 542120 21291373 ~ 21293903 (-) True G86881
TU108401 lncRNA downstream 645091 21189839 ~ 21190932 (-) True G86850
TU108574 lncRNA upstream 275354 22130806 ~ 22188140 (-) True G86997
TU108699 lncRNA upstream 773147 22628599 ~ 22628891 (-) True G87092
TU108737 lncRNA upstream 835156 22690608 ~ 22690889 (-) True G87116
TU108813 lncRNA upstream 1151942 23007394 ~ 23014782 (-) True G87181
TU108827 lncRNA upstream 1220182 23075634 ~ 23076015 (-) True G87193
AMCG00021568 mRNA downstream 74116 21674291 ~ 21761907 (-) True AMCG00021568
AMCG00021569 mRNA downstream 165883 21668928 ~ 21670140 (-) False AMCG00021569
AMCG00021564 mRNA downstream 525124 21295597 ~ 21310899 (-) True AMCG00021564
AMCG00021558 mRNA downstream 594932 21239074 ~ 21241091 (-) True AMCG00021558
AMCG00021559 mRNA downstream 598559 21232931 ~ 21237464 (-) True AMCG00021559
AMCG00021577 mRNA upstream 115837 21971289 ~ 21992069 (-) True AMCG00021577
AMCG00021576 mRNA upstream 146227 22001679 ~ 22012233 (-) True AMCG00021576
AMCG00021580 mRNA upstream 165533 22020985 ~ 22026204 (-) True AMCG00021580
AMCG00021578 mRNA upstream 179408 22034860 ~ 22063539 (-) True AMCG00021578
AMCG00021579 mRNA upstream 208092 22063544 ~ 22066573 (-) True AMCG00021579
TU108350 other downstream 752453 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 1111143 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 1438240 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 1475768 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 1500719 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 1299735 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 1482799 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 3548198 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 4049992 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 4235802 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000095_01983843_01999514.mRNA True 4083 mRNA 0.50 20 CI01000095 1983834 ~ 1999514 (-)