RNA id: TU108146


Basic Information

Item Value
RNA id TU108146
length 284
RNA type TUCP
GC content 0.51
exon number 3
gene id G86640
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20358301 ~ 20360255 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCAAACACTTGCATTGGATCACTGCTCCTGATGCCACCAGAAAGCCCAGGGATGTTGGAAATGTCTCGGACGGAAAGAAAAGACATAAAGAGACTTGCAGATTCCATCTCTGAGCAGTTCAAGCACTTTGACAAGAGTGAGGTGGAGAGTTTGATCCGGCTCTTCAACATCATCCTTGCGGAGCAGAGGGGGAGCCACGCAGAGACCAAGCTTGACCGCCTGGATTTTCAGCACGTGATGCAGAAGTCATTCGGCATCACAGAAGAAACCATCTTGGAGCGAG

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108144 lncRNA downstream 1822 20355070 ~ 20356479 (-) True G86639
TU108095 lncRNA downstream 18559 20325693 ~ 20339742 (-) True G86598
TU108082 lncRNA downstream 76705 20281152 ~ 20281596 (-) False AMCG00021514
TU108002 lncRNA downstream 205534 20152220 ~ 20152767 (-) True G86530
TU107936 lncRNA downstream 439498 19912537 ~ 19918803 (-) True G86477
TU108154 lncRNA upstream 32789 20393044 ~ 20394206 (-) True G86648
TU108199 lncRNA upstream 252408 20612663 ~ 20614108 (-) True G86689
TU108253 lncRNA upstream 461377 20821632 ~ 20822603 (-) True G86736
TU108256 lncRNA upstream 462745 20823000 ~ 20823964 (-) True G86738
TU108257 lncRNA upstream 463767 20824022 ~ 20827297 (-) True G86739
AMCG00021519 mRNA downstream 60651 20287321 ~ 20297650 (-) True AMCG00021519
AMCG00021514 mRNA downstream 73322 20281545 ~ 20284979 (-) True AMCG00021514
AMCG00021515 mRNA downstream 78926 20275058 ~ 20279375 (-) True AMCG00021515
AMCG00021516 mRNA downstream 150825 20206322 ~ 20207476 (-) True AMCG00021516
AMCG00021509 mRNA downstream 396204 19951017 ~ 19962097 (-) True AMCG00021509
AMCG00021521 mRNA upstream 11545 20371800 ~ 20376570 (-) True AMCG00021521
AMCG00021520 mRNA upstream 18168 20378423 ~ 20389444 (-) True AMCG00021520
AMCG00021524 mRNA upstream 42528 20402783 ~ 20412472 (-) True AMCG00021524
AMCG00021523 mRNA upstream 54275 20414530 ~ 20435051 (-) True AMCG00021523
AMCG00021525 mRNA upstream 84288 20444543 ~ 20460278 (-) True AMCG00021525
TU108097 other downstream 22997 20329422 ~ 20335304 (-) True G86600
TU107835 other downstream 889568 19466060 ~ 19468733 (-) False AMCG00021495
TU107755 other downstream 1080278 19275354 ~ 19278023 (-) True G86327
TU107753 other downstream 1090840 19260945 ~ 19267461 (-) False AMCG00021483
TU107653 other downstream 1448393 18821533 ~ 18909908 (-) True G86241
TU108155 other upstream 35357 20395612 ~ 20397783 (-) True G86649
TU108218 other upstream 361629 20721884 ~ 20724880 (-) True AMCG00021534
TU108350 other upstream 703603 21063858 ~ 21083570 (-) True G86808
TU108883 other upstream 2794932 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 2977996 23338251 ~ 23338484 (-) True G87263

Expression Profile