RNA id: TU107802


Basic Information

Item Value
RNA id TU107802
length 2755
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G86367
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19392097 ~ 19394874 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacaaataaacatggagAAGGTAAACGTTATTGAATAATGTGCGTTCAGTCACAGGAGACACCATTAAAACGCAGAGACAGCCAACAATACCCTCTCCGACTGGCGAGGTTACAGAGAAGGAAGAGGTTTTTGTGTGAAATTCAGAAGATTAAATCATGAACAATCAAAGCAACTGAAAGAGTAAAACGCAGGGAAACGACCGCAGGACTAAACTGAAattgggacttttttttttttttcttctacataATTCCAGATTTTGCGAAGGATGGCTTCAGTCACTCACCAGTAATACGAATCCAGTCAGTGTAGAGATGTTAGTGGTGGTTTAGTGGGACCTTATGACCCGTACATTGTTTCACAGTGAAGATGATGAACACAGCACAGACTGGGGCTGCTGTCCACTGAGGCTGGAGTCCGCAGCCCCCCAAGAAGAGGGATCGCACCGCCCCAATCTCACTTCCCTCGCACACCTGGCCTCGGTTTTCTACGGACAATCAACAAATCTGCTGTCCGCGATGTCTGTTCTATCTGTTCATGTAAACGATGCTCAAGACCCAAGGAAATGGTATTCTGCATTTCTGCTGCAGTAGCGCTGCTCTCTGGGTCTCAGGGATTATGGACGGTTGCTGTCCAGGGTTCTGATTATGGCTTCTGTGCCAAACTGTGCTTCGGGTGTTCAGTCAGAAGAGACGGCAGTGAGATACCACAACATGTGACCACAGTTCAAATGCAAGGGCTTACAATTCACTTTCTTCTGGTACAGAGAGCACAGTGAGCTAAAGGCAAACAGGACCAGATCAAATCACCTGAAAAAAGTACACGGCTCAGCCTTGTCTCACAGTTTGACCTTGTTTCTcctaaaagtaaaatgttgGACAACGAAGAGGCACGATCGAAAAgaaatttattatttaaattaagtacaaaAAATGTTTGGAAACATTAATACAGAATGGAATAATTggcaaataaaattaatatctgATGTACAGAcaatgcacgcacacacagtgtCAGGGAACTCCAGGCAGCAATACTAAGCGCACTGCTGTGAGTGACAGATCTGGGTCTCCTATTGCACAATAAGGaagaagaacacaaaacaacacaaatgaccCCTAAAGTGGCGAGTTTATACTAAGGTGCTTCATCTCACTCCAGTTTTCACAACACAAACGTAGTGAATGTAAAACTATTGAGCTCAGGAGTGACCAGGTTAAGAATCTAATCTAGGGTgagtaaaacaaatcaattataataatcctAATTTGCTTTGGTCGTCTCCCACGGTTTGGCAGAATAAACATaaccttaaaaaacacaagcagcaaAGACCTACAGATCTATCAAATTGATCACATTACATTCTTCGGGAATTTTAAGAAATTGGTACATTACTGTGATATGCGTACATTTTGAGGTATAGGTTTCTGATTGATTAAAACCAAACAGTATATTTAAGTTAATTAGTGACAGGAAATAGAGCCATTAAAACCACATTCAAACACTGAACACAGTAGATGAAACAACcacaagcaaatacaaaatacacgtACGTGGGATCTGTTGTTCAGTGCTTCGGTACTTTAAACTAGGACTCATATTAGTAGAATTTGTATCCAAAAGTACGATGTAAATTCCTCAGagggaatgaaaaaacaactaaaaataagGTTTGTTGTTTGTGTAGATAAAAGGCTTCTTAAAAGGTCAGCAAATCTTGAGATTAAAAGCATTCAGCACGATCTGTAAACAGAAACATTCAGGTCCTGTAAAGGGCCGGGCAGCAGCGCCCAGCATGGCCTCCTCACTTCCATGAGAAGAGACGCTTTCAAAGCATGACAGTAAAGCTGGACGAACGAAGGCACAGACAAGACCGATCACCGCCGAAGCTTTGCACAACTATGGCTTCTTCTGATGTTTCACAggattcaaaacaaacagtaataaaaagGCCGATGCTAACATTAAGGGGCACGTCCATCCCAAGCCGAGGCAACATTTCTGCCACGAGGCAACATCCAGATCAAACCAGGCGTCTTTCCTGCAGTGACTTCAGGTGTGTTAACCCAGTTGCCCTGCACTGACAGGCCTGTTCCAGTAGTTTAACCCATTTTAGTCGGACACATCCTCTGTAAACATTACAACAAATCTCAAAGAAAAACTCTCTCCTGGTTATAGTACCCAACTTAAATACTCAGAGGGTCACACGTTCTCCTCCCTCATGCAAGAACCACAAGTTTTACACCATGCTTTCATGTGTGCTACCAAAAACAGTGGTTTCAGCAGATTCCTGGAagtgatctctctctctgtctggagCCTCCCTAGGTCAAAGGCTGTGCTTGTGGAAGAAAACTGCCGCCCAAGACCAGCTGCTGGGATGGAAGTGATGGAGTAGATGATACCGCTGACAGAGCAGGGGCAAGACGGTCATATGTTCATGAAAGCTGCTCAATAAAGGGGACAGAAAAGACCGTAACAAACAGAACAGTAAGCCATGTCTCTCTGTAGCTCTAGGCCTTTGGAGACGGATGGCAGGATGGAGTGAAGACGCACAGAAGACACGGTCTCAGCCCCCCAGCCTCGGCCCTGGAGCCGCACTCAGGAGGGGGTGAGTCCCGGGCTGGTCATCTCTGTGGTGGGGCTGGCTAGGCACTCGCTGGACTTGAGGCTTGCTAGGGACTTGTAGCTGGCCACGGATGTCAGGGAGCCACACAGGCCCAGCAAGGACGGGGTCTCCTCCTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107751 lncRNA upstream 133242 19258458 ~ 19258855 (+) True G86323
TU107735 lncRNA upstream 165329 19224453 ~ 19226768 (+) True G86309
TU107705 lncRNA upstream 238815 19153015 ~ 19153282 (+) True G86284
TU107691 lncRNA upstream 336994 19047049 ~ 19055103 (+) False AMCG00021472
TU107641 lncRNA upstream 712221 18679113 ~ 18679876 (+) True G86229
TU107824 lncRNA downstream 53855 19448729 ~ 19449107 (+) True G86387
TU107871 lncRNA downstream 191115 19585989 ~ 19587369 (+) True G86419
TU107908 lncRNA downstream 434942 19829816 ~ 19837813 (+) True G86454
TU107909 lncRNA downstream 457495 19852369 ~ 19894619 (+) True G86455
TU108001 lncRNA downstream 757371 20152245 ~ 20152766 (+) True G86529
AMCG00021491 mRNA upstream 343 19384029 ~ 19391754 (+) True AMCG00021491
AMCG00021488 mRNA upstream 49273 19341820 ~ 19342824 (+) True AMCG00021488
AMCG00021484 mRNA upstream 84973 19299536 ~ 19307124 (+) True AMCG00021484
AMCG00021485 mRNA upstream 97318 19281051 ~ 19294779 (+) True AMCG00021485
AMCG00021479 mRNA upstream 144419 19232128 ~ 19247678 (+) True AMCG00021479
AMCG00021493 mRNA downstream 27850 19422724 ~ 19446623 (+) True AMCG00021493
AMCG00021492 mRNA downstream 65590 19460464 ~ 19465577 (+) True AMCG00021492
AMCG00021496 mRNA downstream 75367 19470241 ~ 19471029 (+) True AMCG00021496
AMCG00021501 mRNA downstream 219321 19614195 ~ 19622221 (+) True AMCG00021501
AMCG00021505 mRNA downstream 518658 19913532 ~ 19918822 (+) True AMCG00021505
TU107757 other upstream 109182 19279765 ~ 19282915 (+) False AMCG00021485
TU107506 other upstream 1142411 18248490 ~ 18249686 (+) True G86121
TU107177 other upstream 2387966 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 2678059 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 2730215 16656644 ~ 16661882 (+) True G85787
TU107857 other downstream 104926 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 947736 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 983549 20378423 ~ 20380424 (+) True G86616
TU108100 other downstream 1004052 20398926 ~ 20401249 (+) True G86601
TU108198 other downstream 1272596 20667470 ~ 20667927 (+) True G86688

Expression Profile