RNA id: AMCG00021488


Basic Information

Item Value
RNA id AMCG00021488
length 1005
RNA type mRNA
GC content 0.65
exon number 1
gene id AMCG00021488
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19341820 ~ 19342824 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCTGCCGAGACATCCATGCCACCACCGCCCTGGCCTTTGTGGTGGCGTTGCTGTCGCTGGGGGCGCTGCTTACGGCCACCCTGGTGCCCCAGTGGAGGGTGACCAGCCTGAGCACCTTCAACAAGAACGCCAAGAACGTCACCATCTACGACGGGCTGTGGGCCAAGTGCGTACGTCAGGACGGCAGCAGCGGCTGCCTGATCTATGACTCGGAGTGGTACTCCAAAGTGGACCAGTTGGACCTGCGGGTGCTGCAGTTCGCCCTCCCAGTCAGCatcttcttctcctccctctcgcTGCTGCTGGGCATGACTGGCATGTGCAAAACGACTTGCTGCCCCGGAGAGGCAGACGTGAATGCGGAGCGGTGCCTGGTGAACAGTGTGGGCTGCCACCTGGTGGCCGGTGTGCTGTACTTCCTGGCAGGGGGCGTGTCCATGGCCCCATCTGTCTGGTTCCTCTTCAGCACCGCAGAGCTGAACCAGAAGTTCGGGCCGCTGTTCTCGGTGGACTTCGCGGTGTACGTCGCCATCGGCGGGGCAGGGGGCCTGCTCCTGGCAGCCCTCCTGCTATTCCTGTGGTACTGCATGTGCAAGGGCCTGCCATCCCCCCTGTGGCTGCCCCTGCAGTCCCAGCCCCCTGTCGCACATGGCTTCCCCCCCTCTGGCGGCTACGCCTCCCCCGTGTTCCCCCCCCAGACCTATGTCCCGCCACAGTTCGCTGCTCAGGTCCCCAACCAGGCATACGTCCACGGATACCCCCCTCACATGCTGGCCCTGCAGGAGGCCCCCCAGCAGACATCCGCCCCTCACACCTACATGTCTCAGATCTCCGCCCCCGAGGGCTACGGTTCTGAGGCCAGCGTCCCCCAGAGCTATGCCCGTCAGAGCTACGCCTCCCAGTCCTATGGCTCCCCCAGCTATCTCTCCCCCCGCTACTCCACGCGCTCCCGGCTCTCCACCATCGAGATCGACATCCCCGTGCTCTCTCAGGAGCGCTGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0051056 regulation of small GTPase mediated signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107751 lncRNA upstream 82965 19258458 ~ 19258855 (+) True G86323
TU107735 lncRNA upstream 115052 19224453 ~ 19226768 (+) True G86309
TU107705 lncRNA upstream 188538 19153015 ~ 19153282 (+) True G86284
TU107691 lncRNA upstream 286717 19047049 ~ 19055103 (+) False AMCG00021472
TU107641 lncRNA upstream 661944 18679113 ~ 18679876 (+) True G86229
TU107802 lncRNA downstream 49273 19392097 ~ 19394874 (+) True G86367
TU107824 lncRNA downstream 105905 19448729 ~ 19449107 (+) True G86387
TU107871 lncRNA downstream 243165 19585989 ~ 19587369 (+) True G86419
TU107908 lncRNA downstream 486992 19829816 ~ 19837813 (+) True G86454
TU107909 lncRNA downstream 509545 19852369 ~ 19894619 (+) True G86455
AMCG00021484 mRNA upstream 34696 19299536 ~ 19307124 (+) True AMCG00021484
AMCG00021485 mRNA upstream 47041 19281051 ~ 19294779 (+) True AMCG00021485
AMCG00021479 mRNA upstream 94142 19232128 ~ 19247678 (+) True AMCG00021479
AMCG00021478 mRNA upstream 121546 19202878 ~ 19220274 (+) True AMCG00021478
AMCG00021480 mRNA upstream 161299 19164678 ~ 19180521 (+) True AMCG00021480
AMCG00021491 mRNA downstream 41205 19384029 ~ 19391754 (+) True AMCG00021491
AMCG00021493 mRNA downstream 79900 19422724 ~ 19446623 (+) True AMCG00021493
AMCG00021492 mRNA downstream 117640 19460464 ~ 19465577 (+) True AMCG00021492
AMCG00021496 mRNA downstream 127417 19470241 ~ 19471029 (+) True AMCG00021496
AMCG00021501 mRNA downstream 271371 19614195 ~ 19622221 (+) True AMCG00021501
TU107757 other upstream 58905 19279765 ~ 19282915 (+) False AMCG00021485
TU107506 other upstream 1092134 18248490 ~ 18249686 (+) True G86121
TU107177 other upstream 2337689 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 2627782 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 2679938 16656644 ~ 16661882 (+) True G85787
TU107857 other downstream 156976 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 999786 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 1035599 20378423 ~ 20380424 (+) True G86616
TU108100 other downstream 1056102 20398926 ~ 20401249 (+) True G86601
TU108198 other downstream 1324646 20667470 ~ 20667927 (+) True G86688

Expression Profile