RNA id: TU111040


Basic Information

Item Value
RNA id TU111040
length 850
RNA type TUCP
GC content 0.41
exon number 5
gene id G89004
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34346988 ~ 34380295 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGAAATAGAAGGAAGGAAGCTCTTAAGGGAAGACAGCACTGCTAACTACTGTTGCAAATATCCATACAGTCAATATGTATCTTAATCAGAATTAATGTAGCTTGATAAAATATCTGTACAAATGGTATGTGCATGTTGACTTGTggtgcaaatatttattttctagtaaTAATTGTGAGAAGGATGCTGTCATCGTTTCCATCATCAACGGCCTAACATCCATTTACGCTGCCACTGTAATATACTCCATCATCGGATTCCGAGCAACTGAGAGATATGACGACTGTGTTAATGGAAATATTCTGACCCTAATGAACACTTTTGATCTGTCTGAAGCTAACATTACTGAACACACCTACAATGATGTTCTCGGACAACTGAACAGCACATTTCCAGCGGTCATTCAAAATCTTTCTCTTAAAACCTGTGACCTCAATAGTTTTCTAAGTGAAgGTGTGGAAGGAACTGGCCTTGCATTCATCGTCTTCACTGAAGCAATTACTAAGATGCCAGTGTCCCCATTGTGGTCCATTTTGTTCTTTATCATGCTGTTCTGTCTCGGTCTGTCATCCATGTTTGGCAATATTGAAGGAGTCATTGTGCCTCTTCAGGACTTAAAGGCTTTTCCCAAGTCATGGCCCAAGGAGCTCATAACTGgcaCCATATGTCTGGTGTGTTTTCTGATCGCCTTGATATTTGTCCAGCAATCTGGGAATTATTGGCTGGCGCTGTTTGACAGCTTTGCTGGGTCCATTCCTCTGCTGATCATTGCTTTCTGTGAAATGGTTGGAGTGGTGTACATTTATGGAATAGACAGGTTTAACAAAGACATTGAATTTATGATCGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111037 lncRNA downstream 999 34344635 ~ 34345989 (-) True G89003
TU111025 lncRNA downstream 60686 34284384 ~ 34286302 (-) True G88991
TU110961 lncRNA downstream 169507 34177047 ~ 34177481 (-) True G88939
TU110940 lncRNA downstream 366160 33976080 ~ 33980828 (-) True G88918
TU110902 lncRNA downstream 501536 33845114 ~ 33845452 (-) True G88883
TU111045 lncRNA upstream 36129 34387254 ~ 34388010 (-) False AMCG00021868
TU111049 lncRNA upstream 68635 34419760 ~ 34420279 (-) True G89011
TU111206 lncRNA upstream 728448 35079573 ~ 35081173 (-) True G89130
TU111310 lncRNA upstream 1018981 35370106 ~ 35370480 (-) True G89212
TU111340 lncRNA upstream 1053932 35405057 ~ 35405340 (-) True G89240
AMCG00021863 mRNA downstream 72277 34263815 ~ 34274711 (-) True AMCG00021863
AMCG00021865 mRNA downstream 86592 34251674 ~ 34260396 (-) True AMCG00021865
AMCG00021864 mRNA downstream 97341 34242865 ~ 34249647 (-) True AMCG00021864
AMCG00021860 mRNA downstream 157462 34179592 ~ 34189526 (-) True AMCG00021860
AMCG00021861 mRNA downstream 332098 34006659 ~ 34014890 (-) True AMCG00021861
AMCG00021868 mRNA upstream 27576 34378701 ~ 34387667 (-) True AMCG00021868
AMCG00021870 mRNA upstream 394578 34745703 ~ 34757627 (-) True AMCG00021870
AMCG00021878 mRNA upstream 415727 34766852 ~ 34784712 (-) True AMCG00021878
AMCG00021879 mRNA upstream 439143 34790268 ~ 34809602 (-) True AMCG00021879
AMCG00021877 mRNA upstream 460031 34811156 ~ 34820379 (-) True AMCG00021877
TU110795 other downstream 2277524 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 3214803 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 3458776 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 3922376 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 4604180 29730077 ~ 29742808 (-) True G88405
TU111315 other upstream 1023891 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 1592627 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 2063914 36415039 ~ 36438350 (-) False AMCG00021895
TU111619 other upstream 2327402 36678527 ~ 36687642 (-) False AMCG00021897
TU111771 other upstream 3910262 38261387 ~ 38283855 (-) True G89598

Expression Profile