RNA id: TU7716


Basic Information

Item Value
RNA id TU7716
length 1668
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G5369
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22444958 ~ 22446648 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAATTACAGTTTGGCCATTGCTTTTCGTCTCTTCCACAATGATTTTCTCCTCTTCGGGAAAAAGCATATGTGGCCCTGACTCCTTCCTtgatcctgaaaaaaaaaagtaataatgttAATAGACTAAAATGGGACAGTAACATAGTGAACACACTGACAggttatataattaattatttcattatagccaatatactattatagtttttattcatatttctaattattagtttatttttcagtttgatgttaacttagtaattttgttgtgtattttgccatttttaatatGGTTCATCAGCggatttttatttcagtttcagtacTATAACGCTACAATAGTCCTGAATTGTACAGAAACCGAAGTTTAGGATGCTGtactaaaaatgtttctgtacTTTAAAAGCATTGCTCGTTCATGAACTTACATTTTGCCTTCAAAAATTATATGCTTGCTActttcatttcaaacaaaatgtatacatgAGCAGCAGCTCTTACGGGACACAGAACCCATTCTGTTAGTGTGAGTTATCCATATACTGTCATAGTCCGAGTCTTCCGATTGATCAGAGGAGGGAAATCCGCTGCTACGGCAACCCACAGCATCCACACACGATTGGTCAACATCAGCCAGCACATGATTATGCATCAAATCAGTGCCCTGCCATGCTAATTAGGGATGGGGATCAAACCAATCATATTGGAGAGGACAGGTGGGTTAAGAGGATGGACCAAACCAAGAGGAGTAAAGTGGGGGAGAACCAAAGATGCCCgaaaaattatatagatataaataaatgacagaatgaaacaaaaatataataatagtggGACAACATAAGAGAGAAATGggtgaaagaaaataaatggatggaaggaaaggaggaagagagacaaatattcatgttaaaaagagcagaaaatattaaaagattgAGCAACGCAGTGGTAAAGAGTTATATAGCcattaaaatgcagtaaagATGTTGCAGTGCTTCATTGTCTGACAGGACAGATGAAGGTGATCTGTAGGACTCAAAATAAGGGCCTCATATTCAAAACACACCACCCTTTTAAAGTTCAGGGTCAGTaagatgttttatgtttttaaaagcagtctCTCattcaccaaagctgcattaattaaaatacagtaaaaacagtgatattgtaaaatattacaatttaaaataattttatttgaatatattttaatgatgcaaaatgatgcaaagctgaattttgagcaATTTCTTaggattttacatttttactcacCTGATCCTTTGGGAATCATTGTAAAAATTTAAACTCCTGAAATTTTTACTGTCATTctcaatgctgaaaatgttgtggcttttaatagttttgtggACACAGCAATGCATTTTTTCGGGTTTCactgattaattaataataacaaacctTTGTCAAAACTGAAAGTATTATGTGGGATCCACAGTTAGTAGTATTGTGCTCACTCATTTACACAGACAAATCCCATCAGGATCTTGGAGTGAAACAAGAAAAatcacaagaaaataaaaaaaaaaaaaaaaaaaaaaaaaaagatatagaGATTACATACTTGAGTTTAGTGTTTGCCTTGTTTTAGCGCTTGTGCAGTATGCTTCGATCACTTTCAGGATCTGAGCGTCCTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7752 lncRNA downstream 6604 22434613 ~ 22438354 (-) True G5395
TU7712 lncRNA downstream 30951 22412462 ~ 22414007 (-) True G5368
TU7709 lncRNA downstream 31028 22412462 ~ 22413930 (-) False G5368
TU7696 lncRNA downstream 61986 22348514 ~ 22382972 (-) False G5366
TU7704 lncRNA downstream 61986 22348514 ~ 22382972 (-) True G5366
TU7764 lncRNA upstream 79468 22526116 ~ 22526422 (-) True G5404
TU7765 lncRNA upstream 79993 22526641 ~ 22526865 (-) True G5405
TU7768 lncRNA upstream 92621 22539269 ~ 22539520 (-) True G5408
TU7780 lncRNA upstream 157109 22603757 ~ 22604687 (-) True G5413
TU7789 lncRNA upstream 173161 22619809 ~ 22621217 (-) True G5422
XM_043234731.1 mRNA downstream 33260 22394516 ~ 22411698 (-) False pnpla6
XM_043234715.1 mRNA downstream 33409 22385513 ~ 22411549 (-) False pnpla6
XM_043235610.1 mRNA upstream 93500 22540148 ~ 22602648 (-) False atp11a
XM_043235593.1 mRNA upstream 93500 22540148 ~ 22602648 (-) False atp11a
XM_043235601.1 mRNA upstream 93500 22540148 ~ 22602648 (-) False atp11a
XM_043235583.1 mRNA upstream 93500 22540148 ~ 22602648 (-) True atp11a
XM_043235618.1 mRNA upstream 97315 22543963 ~ 22602648 (-) False atp11a
TU7673 other downstream 116029 22259439 ~ 22328929 (-) True G5356
unassigned_transcript_106 other downstream 560768 21884118 ~ 21884190 (-) True trnat-ugu
TU7268 other downstream 648520 21774634 ~ 21796438 (-) False LOC122348907
TU7269 other downstream 672196 21724387 ~ 21772762 (-) True G5108
TU7258 other downstream 721893 21721504 ~ 21723065 (-) False G5104
TU7773 other upstream 93036 22539684 ~ 22550950 (-) False atp11a
TU7878 other upstream 467252 22913900 ~ 22916405 (-) True G5468
XR_006251794.1 other upstream 1325975 23772623 ~ 23916448 (-) False LOC122351696
XR_006251793.1 other upstream 1325975 23772623 ~ 23916446 (-) False LOC122351696
TU8134 other upstream 1586215 24032863 ~ 24034499 (-) False G5624

Expression Profile