RNA id: TU7878


Basic Information

Item Value
RNA id TU7878
length 1743
RNA type TUCP
GC content 0.46
exon number 2
gene id G5468
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22913900 ~ 22916405 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGAAATATCatggaattttatttttgtagttcaGTTTATTCATTAGAGACTTATGACATTTTTATCTGTGTTATTTATAGATACAACGCTCATCAGTTTAAATCCAACAAGATGATTGTTACAATCCACTGAGTAAAAGTATTTATGAATTGGacagtttattatttgtatgtatgtagcATCTACAAATATTTAACACCTACACAAGCTGGAGTTCTAAACTGTACGTCATGATCTTAAAGATATAGTTCACcaaattatgaatatttgcaaaatgtagatgaatttgtttttcatcagaacagatttgaaggAAGTTGCTCGCCAGTGGTTCCtttgcagtggatgggtgccgtcagagtccaaacagctgataaaaacatcacaataaccctCAAGTAATACGTCCGTCGATTAACATCTCGAAAAGCTAGGTTTGTAACTGCGACTCACATcacgacggcacccattcactgcagaggccGAGCAAGTGCAGCGCTGCTACATTtctgttcccatgaagaaacaagctccTCTAAAACCTGGACGACCTCGGGTTAAATCAATTTTCTACAAGtccatttttttgtgaactactcctttaagacCACATCGTTTTTGGTTGTTATTTAGTTTGTATATTCACCAAAACATATATACCATTTTAAAGCTTTCTgtgaaataattatgaaaataaagtacAAGATACCCAACTTTTAGCAACCCACTGTAAAGTTTTCTGTCAAGGGCTCAGTCTGAATTCAACCCAAAACTAAACCTCGTCTAAATCTTGTTGGGTGTATCACTCTCACCACGGCTGGACTTTCTTCTCTGAAACGAACTGCCCGTGGGGCTCTTTAGCCCCAGCAGGCAGCAACGCCAAGTACACTGGCGTGACGGCGCCCTCGTCTGGTGATTTGGTTGCATTTGGTCCAGCCATGTCAGTCCTGACCCATCCTGGACAGCAGGCATTGCATAGTATCTCATCTCCAGGCCTCTCTTTCGTCAGGTTCCGGGCCTGGATTCTGGTTAGGGTGGTAAGGCCAGTTTTAGAGACCCCATATGCAGTATTAGGCCAACCTCGCTCTGCATGAACCCCTTCCTGAGCGTCACGGACGAATCGCTCCATCAGTCCAACCAGCTCTTCTTCTGTAATGTCATCGCTTCGGAAGCGGGCCTGGAGCTCTGGACTGCAGCGGCTTAAAGCCACCGAGCTCATTATACTAGAGACATTCACCATCCGACCTAGAGATAAACGTTAGTGTTCGTGGGAAGACAAAAATCACCAGACAAGTTACAACTGACACGACTTACCTCCTGGTTTGATAATGGGGAGGAAGACGTTGCACATATCTCTAGTAGCAAAGAAAttagtcttcagcgtcacatctGCTTGGACGCCAAAGGGGGTCGTGTCCGCCGCTGCTCTTGAAGGCGATGCCAGCGTTGTTGACGAGCACGTCGAGGCCGCCGTACTTCTCTGTGAAGAAGTCCCGCGCGGAGCGGACGCTGTCGGGGTCGTTGATGTCCAGCCGGTGAAAGATCGGTGCCAGCCCCTCCTTCCTCAGACTGTCCACAGCAGCAGTTCCTCGACCGACATCCCGAGCCGTCAGATACACGTCTCCGGAGAAATCCTTGCACATTGCCCGCACGATTGCGAACCCGATGCCTTTATTCCCGCCAGTGACCAGAGCCACTTTACTGCCGCTCATTGCTGCGATGTGTTTGCGGTGGACAcgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7851 lncRNA downstream 48106 22864839 ~ 22865794 (-) False itsn1
TU7854 lncRNA downstream 62552 22851012 ~ 22851348 (-) True G5466
TU7853 lncRNA downstream 71876 22841802 ~ 22842024 (-) True G5465
TU7852 lncRNA downstream 74308 22838956 ~ 22839592 (-) True G5464
XR_006250464.1 lncRNA downstream 148785 22759628 ~ 22765115 (-) True LOC122341430
XR_006250508.1 lncRNA upstream 57274 22973679 ~ 22978634 (-) True LOC122342025
TU7913 lncRNA upstream 101833 23018238 ~ 23020831 (-) False gja5b
TU8030 lncRNA upstream 703295 23619700 ~ 23622881 (-) True G5577
XR_006251150.1 lncRNA upstream 792008 23708413 ~ 23713457 (-) True LOC122346633
TU8036 lncRNA upstream 816769 23733174 ~ 23735603 (-) True G5583
XM_043236520.1 mRNA downstream 292 22909995 ~ 22913608 (-) True setd4
XM_043236412.1 mRNA downstream 10486 22864831 ~ 22903414 (-) False itsn1
XM_043236401.1 mRNA downstream 10486 22864831 ~ 22903414 (-) False itsn1
XM_043236395.1 mRNA downstream 10486 22864831 ~ 22903414 (-) False itsn1
XM_043236384.1 mRNA downstream 10486 22864831 ~ 22903414 (-) True itsn1
XM_043235811.1 mRNA upstream 104381 23020786 ~ 23030310 (-) True gja5b
XM_043246654.1 mRNA upstream 236097 23152502 ~ 23203136 (-) True neurl1aa
XM_043246671.1 mRNA upstream 236097 23152502 ~ 23202865 (-) False neurl1aa
XM_043246663.1 mRNA upstream 236097 23152502 ~ 23180876 (-) False neurl1aa
XM_043248966.1 mRNA upstream 856218 23772623 ~ 23916447 (-) False LOC122351696
TU7773 other downstream 362950 22539684 ~ 22550950 (-) False atp11a
TU7673 other downstream 584971 22259439 ~ 22328929 (-) True G5356
unassigned_transcript_106 other downstream 1029710 21884118 ~ 21884190 (-) True trnat-ugu
TU7268 other downstream 1117462 21774634 ~ 21796438 (-) False LOC122348907
TU7269 other downstream 1141138 21724387 ~ 21772762 (-) True G5108
XR_006251794.1 other upstream 856218 23772623 ~ 23916448 (-) False LOC122351696
XR_006251793.1 other upstream 856218 23772623 ~ 23916446 (-) False LOC122351696
TU8134 other upstream 1116458 24032863 ~ 24034499 (-) False G5624
TU8141 other upstream 1116458 24032863 ~ 24041997 (-) False G5624
TU8143 other upstream 1116458 24032863 ~ 24172062 (-) False G5624

Expression Profile