RNA id: XM_043251772.1


Basic Information

Item Value
RNA id XM_043251772.1
length 1686
RNA type mRNA
GC content 0.46
exon number 4
gene id hesx1
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12663831 ~ 12667588 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatataaatgtaaactaaattagtttttctataaaagcaaactaaaaataaatttaaacttaataaGGCCGTTTTTAAATGCCACCAAAAcctttttattctatttatttacttgttgtTAAGGTGTCAAGAAGTCACGTGTCtaataaacatttagttttcCAAGCACCTCCAACAAACTCCCTCAAATCCCGCCTAAACTGACTGCATTGTGAGTTGAGCGATTTGATATTCATTTCTAATTGGCCTTCTTTTGGTTTGCATTTAAACGGGTCTAATTGGTAATATCTTTGCAAAACAATGGACCCGCTGGGGGCCCGCGCTCGTGTCCCCGGAGCTCTCCCAGAGCCCAAGACAAATAAACAAGCGAGTCGTTTATTAAAAGCAGCCAGGCAACCCGAAAGAGATCAATTCGGCATTGAATGGGACAATTATTACATGCTGCTTCCGGCAAATTGCCCGGCTGCCATTGTGCTTTTGTGATCCCGAGCACCTTTCTCCATGCATGTCAACAGAGAATGGGAATATTCAGCAGGATTAGTTTAAAcggcattattattttaaacccGTGTGGTAGAAAACAAGGTAAATAAGATTAGGCGCTAGTTGACTGCTTTCTCATAATGCTGGAGATGCGGCACGAGGAAACGAGGAGGGGATAAATCCCAGGAACGGGGCCTAATTTTCTACCCGGTGAGTAAAAAGAATGGCTCGTCGGCCCTGTTTTGTCCCGTTCAATAGCAGGTTTAAGGGATTCGGTGTCTCTAGAAGATAACGGGTGCTGCTGCTTCGGGTCGGAAAGGCCTCGTTCGGACCCCGAATTACCTGCAGACCAGGGGCCCCATGCGGAGGGGCCGGCGATTCTCATGTAAAACGCTCGGCTTTGTTTGGTGACGTTTCGGAGCTATAAAGACCGGCCCCCGGCTTGCAGGTCACACCGGAAGAAGAGGACAGGGCTCTCCGGATGGCTTCCGTCAGCGTCGGCGCGCACCAGAGCCGCTCCGTGCCCGGACGGGCTGCTTTCAGCATCGACAGCATCCTGGGACTCGACCGGGCCGAGCAGAGAACCGTCCTGACGGCGCCGCACCGACCCTGGACAGACGTGAACCCAGGGGGTCAGAACCGCGGCGTGGTCGCAGACAGCGGTGTTTCAGTGGACGTGAGGGTGAATGAAGAGGGTAAATCATACAGTAAATCACCGGGAGACGCTTACAGGAGAACACTGAACTGGTACATCGGGCGCAGGCCGCGGACGGCGTTCTCCAGCGTTCAGATCAAGATACTGGAGAGTGTGTTTCAAGTCAACTCGTACCCAGGCATCGACATCCGTGAAGAGCTTGCTAAGAAACTCCATCTAGATGAGGACAGGATCCAGATTTGGTTCCAGAACAGAAGAGCGAAGCTGAAGCGTTCACACAGAGAGTCTCAGTTCCTCATGGTGAAAAACGTCCTCAGTGATTTACAGGAACGCTgattttatcatattattattattattattattattattattattattattatttcagtcgCTCTGTGACGTTgtaatttattatgcatgtcTCGCACGCTTATGCAATTATTAATCTTTTACTCTGATTTAAACGCTGAAGACTGTTTGTTATTGTGTTTGCTGAAAATATgggaattaaaatgcaataaaccGTTTTAATCGAGGGTTTTTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030900 forebrain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09354 HESX1; homeobox protein expressed in ES cells 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120330 lncRNA downstream 88901 12574863 ~ 12575113 (-) True G81353
TU120327 lncRNA downstream 95705 12568109 ~ 12568309 (-) True G81350
TU120326 lncRNA downstream 128588 12534950 ~ 12535426 (-) True G81349
TU120304 lncRNA downstream 140430 12483243 ~ 12523584 (-) True G81327
XR_006252068.1 lncRNA upstream 42818 12710406 ~ 12715974 (-) True LOC122353897
TU120626 lncRNA upstream 150165 12817753 ~ 13057247 (-) True G81512
TU120621 lncRNA upstream 150534 12818122 ~ 13057247 (-) False G81512
TU120623 lncRNA upstream 150534 12818122 ~ 13057247 (-) False G81512
TU120625 lncRNA upstream 150534 12818122 ~ 13057247 (-) False G81512
XM_043251734.1 mRNA downstream 4330 12612824 ~ 12659684 (-) True il17rd
XM_043251778.1 mRNA downstream 54282 12607236 ~ 12609732 (-) True zgc:194981
XM_043251763.1 mRNA downstream 59311 12603666 ~ 12604703 (-) True LOC122353872
XM_043251731.1 mRNA downstream 69227 12577019 ~ 12594787 (-) True tdrd3
XM_043251755.1 mRNA downstream 316329 12345539 ~ 12347685 (-) True foxg1b
XM_043251736.1 mRNA upstream 3579 12671167 ~ 12684887 (-) False appl1
XM_043251735.1 mRNA upstream 3579 12671167 ~ 12684887 (-) True appl1
XM_043251740.1 mRNA upstream 17635 12685223 ~ 12695730 (-) True asb14a
XM_043251775.1 mRNA upstream 32639 12700227 ~ 12701654 (-) True rps23
XM_043251768.1 mRNA upstream 52328 12719916 ~ 12724608 (-) True arf4a
TU120285 other downstream 216727 12445860 ~ 12447287 (-) True G81318
TU120112 other downstream 589939 12073596 ~ 12074075 (-) True G81192
XR_006252156.1 other downstream 762916 11900968 ~ 11901098 (-) True LOC122354705
XR_006252062.1 other downstream 883205 11766831 ~ 11780809 (-) False ero1b
TU119760 other downstream 1244684 11403644 ~ 11419330 (-) True G80956
TU120624 other upstream 150534 12818122 ~ 13057881 (-) False G81512
TU120651 other upstream 222693 12890281 ~ 12896130 (-) False G81523
TU120652 other upstream 225005 12892593 ~ 12896130 (-) True G81523
XR_006252063.1 other upstream 289273 12956861 ~ 12965633 (-) False LOC122353859
TU120815 other upstream 682348 13349936 ~ 13393922 (-) False ccl25b

Expression Profile