RNA id: XM_043252701.1


Basic Information

Item Value
RNA id XM_043252701.1
length 3776
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC122354498
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 7993452 ~ 8019940 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTTTACCATGAGATGAGCTCAGACCCACAGCGGAAATTAGAAAGTCCTCCATTAGAACACTAGAACGGCGAGCGTTTGAGCACACAATCTGACAGCCGCCCATCAAAACCAGCACCGCTCTCTTACTTTTGTCAGAAGCCAGCTCAGCCAATTTAGaATGTGTGAGCCCAGTCCACCTGCTATACATCCCCACGCCAAGGGCAATGTGACCATGGTGGGTGTTGGTATCAAGCTTGAAGACGACGAATCGGGAGGTAGAGTCGTCCACCGAGAATCCCAGCAGTCCTCTCCGGTCAGTGATTGGTCAGTTCGTCAGCTGTCGGACAGAGACGACTCCGAGAAATCAGCGCCTGCTAATACACAATCTCCTTTGGCGAGTTCTCCCAGTAAAGACCCAGTGCGATCATACACACCTGCCAGTCAAGATGGAGGCAGCAGATCTCATGATAAGACTGACAGCAAGCCTAATGTCAGTGAGGtgatgcCTACTATTGAAAAACTTCTGAATACGGACTGGAAAGAAAAGTTCCTTGGGAAGGGTCTTCAGAGCAGTGTCAACCTAAAAGGAACCCCAGAGAGTCTGGCAGAGAAGGAGCTTCAGTTGTTGTTGATGATCAACCAGCTCTCTGGTCTGCGAGAGCAGCTGCTAGGAGCTCATTCTGAGCAGAGGAACATGGCCGCTCTGCTGCTGGAGAAACAGCAGCAACAGATGGAACTGGCAAGGCAGCAGCAAGAACAGATCgccaaacagcagcagcagttgATACAGcagcaacataaaataaacttaCTGCAGCAGCAAATTCAGCAGGTAAACATGCCATATGTTATGATCCCTGCCTTTCATCCCAATGCCCAGCCGTTGCCAGTCACCTCTGAAGCCCAAATGGGTTTGCCTCTGCAGCCCATTCCCTGCAAACCAGTGGAGTATCCCATGCCGTTGCTGCCCAATCCACACTCCACACCAGTCAAGAGGTCCAGTGGTACAGTCTTTCGCCAGGATACCAGTCAACCTCTGAACCTCACGGCTAAACCCAAGACCCCAAGTCCGCAGGCACTGGAAATGGCCCACTTGCAGACCGGGTACCGACCCAGAGATCTGCCACATAGCCCTCCTCGAACTGCCCTCAGCCTGAGCTTCTTGGGAGAGGGTGATGTTGTGACACAAGCCATTCATGATGCCCAGCAGCTGTTGCGTGGAGGACAAGGCCCGACGGGCCGAGAGAGGGACCGTGAGAGGGACAACAACACAAGGCTGATCGTTTTTAAGGAGGCGTCTCGAGACCGGATGGATGACGGACAGTCCCTTCGGGTGAATGAGGACCACCTCAGTAGTGACTCCGAGGGGCAGATGGCAATCTCTGGTGTGGGAAGCTTTGGTGAATCCCGGACTCCCTCCTCTGGCCACATCAAACGTCCCATGAACGCCTTCATGGTGTGGGCCAAAGACGAAAGACGACGCATCCTTCAGGCGTTCCCTGATATGCACAACTCCAGTATCAGCAAGATCCTCgGGTCTCGGTGGAAGTCCATGTCCAATCAGGAGAAGCAGCCCTACTACGAAGAGCAGGCAAGACTGAGTCGGCAGCATCTGGAACGTTACCCAGACTACAAATACAAACCCCGGCCGAAGAGGACCTGCATTGTGGAGGGTAGACGACTGCGGGTCGGAGAGTACAAGGCCATGATGAAGAGTCGACGACAGGAGCAAAGAGTTACTTATCCTCAGAGCCATTCAGAGCAGCAGCTACCGTACCCCTCCAGTGAAGGACAGTACCCGACCACGCCGGTGTCCATGGCCCCACTGCCCTTGCACCCTGCCCTCCTGGAGCACTACCTTCCTCGGGGTCTGGAGCCTCCAAAAGGCCAAGGCAGCGAGATGCTTGAGGCCGCGCGGCCCCGACAGCCCTACAGCGAAGGGGAGGAGAGTGACGCGGGTGAGCGCAGTGAGGGAGAGCTGGTTGTCCTCACTGACTGAGACAGAACCGGGGAATAATCGGAGGACAGAGGGTGCAAAATGCGATGAATGAGACGGACAGTATAACTGGGAGACTTTACAATCCCTACCTACAACATGATGGTGTCCAATAAATGGTAtaggtcagtgtttttttttttctgtccagtTGTGAGGATGTCCTGGTTTCAGACACGCCAGATCAGTCACGTGCTTCTCTAGGGTTGGTTAGGAAGGCAGCAGACGTGATAAGCGGAGCACATATcttaatttttcagatttttccaGCGGTTTAGGCCAGACACCCAGAACAGGTCTCGCATAGTGACCTCCGCTTGGAAAAAGCAAGCCTCTTTCAATCTATGATATTCAATGAGACTGTAAATATCAAGTCTTTCGAAGGCATTGTGAAGCCGGCGttcaaaaattgttttaaaaaccatCAAATGTCACTGCGTTTATTATGAAGTAAATGTTATCTGCGAAGTGCATCGGCAACTGCAGATAAGCGTATTCACTGTTGGCTTATCTGAAAAAGTTCCACATTTGACACCGTGTCAAATGATTGGCAATAATAGCATTAAACGGTTCACACAGACGAAAAGAGTATGGCGagtaaactgaaaagaaaacaatgagctatttctttaaatagcGTGAAGATGCTATGAATCATTTTGCCATAGAAAATGAAAAGgttaaagaagagaaaaaaaactaaaccctCTCCGTGTTAGAACGCTTCTTGATGTCACCAGGGTTTTCCTGCAAAAGTTCCTGTTAAGACTGTGCCAAGGTACTTTCCAGAGCTCAAGGGCtgagcaaaaaaagaaaaagaaaacaagtggaCTTGGAAAAAGGAAGGAACATTCCTGAACTCCTTGTCCAGTTTATTATACCAGATAATGACGATTAGTGGCTGTTCTGTTACAGAGATTTAAGCAGCCTGCCCCTTTAAGACTCGCTAAAGGCAGCGAAGGTCGGTGGCGTCCTCTGCTGTTCGAATCTGGGTACTGCACTTAAGAGATTTCCCCAGgtcaaaatcatatttttatttcttttgatttagTGCAGAATAATCACTTGAAATGCACTTTCCCcatctaatatatattttcagatcCTCATGattcataaaacttttttttttccacagtagAATTTTGCACTTGATGTACATACGCAAATAATTTCTACAATATTCATTTTGTGAAAGGAGATGTGAATAATACCCTTGCCTCAGATTActcccatttttaaaaaatttggtttacttttatattttagtgtgtgcgcgcgtgtgtgtgtgtatagagtgatttttttttttttgtgctgaagAAAATAACTGAGTTATCATTCCAGCAGTTCTTATGACCGGGTCCATATTATTGGGCTGCTAGTCAATTTACAGTTGAGctgaaatgtaaacattttgtttaaaaaaaaaaaaaaattataaacatttatattttaaagaggaGCTTTTAGGAGATATTTGCAAGTGGACTGTTAGGATAAAcctaacattttaaagaaaattatgaCTTGTATATAGCTGGACACAGAAAtacagtttgtatttttatctgtAGAATAAACCCATgcgggcaaaaaaaaaaaaaaaaaaaaaagattcgcAATCTGGACACCTGTTGCAAAACCAGCTGTTGtaaaatatagatatagactttattttgtttataaaagtgtataatttaaaggtgtacatgttttttttcttctgtatgttgcatttttttccgAGCAAGTTTCTGTggtttgtttttgaagcataaataataaaatgttatgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118026 lncRNA downstream 251954 7677242 ~ 7741498 (-) False G79792
TU118025 lncRNA downstream 251954 7735478 ~ 7741498 (-) True G79792
XR_006252132.1 lncRNA downstream 279749 7711597 ~ 7713703 (-) True LOC122354607
XR_006252131.1 lncRNA downstream 289691 7701425 ~ 7703761 (-) True LOC122354606
TU118006 lncRNA downstream 352266 7638442 ~ 7641186 (-) True G79777
TU118269 lncRNA upstream 80722 8097344 ~ 8150834 (-) True G79948
TU118266 lncRNA upstream 82529 8099151 ~ 8150834 (-) False G79948
TU118284 lncRNA upstream 127341 8143963 ~ 8144953 (-) True G79957
TU118293 lncRNA upstream 168711 8185333 ~ 8191088 (-) True G79965
TU118280 lncRNA upstream 179850 8196472 ~ 8201213 (-) True LOC122354197
XM_043252965.1 mRNA downstream 23846 7961025 ~ 7969606 (-) True si:ch211-112f3.4
XM_043252966.1 mRNA downstream 23846 7961257 ~ 7969606 (-) False si:ch211-112f3.4
XM_043251399.1 mRNA downstream 180282 7754526 ~ 7813170 (-) True cdk18
XM_043251530.1 mRNA upstream 17362 8033984 ~ 8035551 (-) False snrpe
XM_043252953.1 mRNA upstream 31121 8047743 ~ 8054838 (-) True kif17
XM_043252954.1 mRNA upstream 38345 8054967 ~ 8060059 (-) True sh2d5
XM_043252842.1 mRNA upstream 44168 8060790 ~ 8067461 (-) True hp1bp3
XM_043252314.1 mRNA upstream 182727 8199349 ~ 8206841 (-) False LOC122354197
XR_006252106.1 other downstream 556981 7374354 ~ 7436471 (-) False LOC122354401
XR_006252105.1 other downstream 556981 7374354 ~ 7436471 (-) False LOC122354401
TU117850 other downstream 1145694 6813625 ~ 6847758 (-) False vamp3
TU117849 other downstream 1145694 6839809 ~ 6847758 (-) False vamp3
TU117706 other downstream 1896972 6096133 ~ 6096480 (-) True G79565
TU118247 other upstream 11984 8028606 ~ 8035533 (-) False snrpe
TU118246 other upstream 17308 8033930 ~ 8035533 (-) True snrpe
TU118263 other upstream 75778 8092400 ~ 8143620 (-) True G79947
TU118295 other upstream 179196 8195818 ~ 8196385 (-) True G79967
TU118535 other upstream 479566 8496188 ~ 8497285 (-) False LOC122353694

Expression Profile