RNA id: TU117849


Basic Information

Item Value
RNA id TU117849
length 1305
RNA type TUCP
GC content 0.42
exon number 5
gene id vamp3
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 6813625 ~ 6847790 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacacacacacacgtacgcacgcacacacagtaACTTAGTAGCTTAGTAGCTTAGTACCAACGGGGCCTTCACAAATCACATATCAACTCAACTATCAAGCATGTCCGCCCCAAGTGCAGATGGCTCTGGTTCTGCAGGGACGTCTGGGGGTAACCGCAGACTGCAGCAGACGCAGGCACAGGTGGATGAGGTGGTGGACATCATGAGAGTGAATGTCGATAAGGTCCTGGAACGAGACCAGAAGCTGTCCGAGTTGGACGACCGTGCTGACGCCCTGCAGGCCGGCGCTTCCCAGTTTGAGACCAGTGCTGCCAAACTAAAGAGAAAATACTGGTGGAAGAACATCAAGATGTGGGCCATTTTGATAGCTGTGATTTTGATCATCATTGTCATCATCGTCAtCTGGTCgaagtcataaaaacagaaACCCGGTTATGATCGGAGGAGAAGCTTAGAGCatcagaaagaagagagagagaatgaatgaatgaatgctctTCCAATACGTTCTAACCTGCTGATTTTCAAAAGCATATCTTGTAAACTATCCTcgatgtttgttttctttttataggtcttttgtttttaatgactaGGATTCAAATATGTTCCCGAATGCCATTTCCAAGTGCATCTAACACACTCCTCTGTGCAAATGACTGACAGCGTACGGGTTACAACATAACAAGCACGCTTTCGTCATATCACGTGGACAAAACGTATCGACCAAAACCTCCAAAGCCATTTGCCAAGATCTGATCTCTTTGATGAATCCCTCTAAGACTCTTCCAGCGCACGGGTCGTGATCAGACACTCTCGAGTCTTTCTGGGCCAACGAGACAAAAGAGCCTTTCCTGAACAACCACAAACGTGCCTTTAAACAACTCCACTGCCATCCGGAAACAACAGCACAGAACTTTTGCTCTGATTTTACTCAGAATATCTGCACAAGAATTATAAAGAAGTTTGAGATATTATTGAAAGATCGAATTTCGAAGTGATAATTTGCTAATAATTTAACTGCATTATACTTTTTGCCTCATGTAGAAATAGTTTGCTAGGAAATATCTTTGCTTAACGAGGATTTCGGTAGTATTTTGGTGTTTTCCTCACCTCTCGCTCACGGTGCCAaaacatttgagttttttttttttttttttttatgtatctctttgtatgtttcacGTGTATAAATTGTAAACAAGTGCAATTCTATGCTTGTGGCCTTACAAACTATATTAATCTTGTTGAATTGCCCATGCTGGCTGAATAAAACACGGATTTAACATCTTTAAGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117767 lncRNA downstream 105949 6331954 ~ 6733860 (-) False G79608
TU117766 lncRNA downstream 105949 6340026 ~ 6733860 (-) True G79608
TU117787 lncRNA downstream 220572 6611911 ~ 6619237 (-) True G79625
TU117784 lncRNA downstream 233735 6599346 ~ 6606074 (-) True G79622
TU117783 lncRNA downstream 272391 6565245 ~ 6567418 (-) True G79621
TU117885 lncRNA upstream 283830 7131588 ~ 7141226 (-) True phf13
TU117886 lncRNA upstream 283830 7131588 ~ 7141226 (-) False phf13
TU117976 lncRNA upstream 305707 7153465 ~ 7155263 (-) False LOC122354641
TU117991 lncRNA upstream 420839 7268597 ~ 7327234 (-) True G79768
TU118023 lncRNA upstream 670118 7517876 ~ 7518290 (-) True G79791
XM_043251905.1 mRNA downstream 977 6818532 ~ 6838832 (-) False per3
XM_043251900.1 mRNA downstream 977 6818532 ~ 6838832 (-) True per3
XM_043251902.1 mRNA downstream 987 6818532 ~ 6838822 (-) False per3
XM_043251904.1 mRNA downstream 1037 6818532 ~ 6838772 (-) False per3
XM_043251903.1 mRNA downstream 1121 6818532 ~ 6838688 (-) False per3
XM_043252306.1 mRNA upstream 1231 6848989 ~ 7121128 (-) False camta1b
XM_043252301.1 mRNA upstream 1231 6848989 ~ 7121125 (-) False camta1b
XM_043252300.1 mRNA upstream 1231 6848989 ~ 7121124 (-) False camta1b
XM_043252299.1 mRNA upstream 1231 6848989 ~ 7121122 (-) False camta1b
XM_043252298.1 mRNA upstream 1231 6848989 ~ 7121122 (-) False camta1b
TU117706 other downstream 743329 6096133 ~ 6096480 (-) True G79565
TU117068 other downstream 2874032 3962914 ~ 3965777 (-) False si:dkey-197i20.6
TU117044 other downstream 2925174 3913248 ~ 3914635 (-) True G79085
TU117055 other downstream 3016711 3813633 ~ 3823098 (-) False LOC122354343
XR_006252141.1 other downstream 3160883 3678762 ~ 3678926 (-) True LOC122354690
XR_006252106.1 other upstream 526596 7374354 ~ 7436471 (-) False LOC122354401
XR_006252105.1 other upstream 526596 7374354 ~ 7436471 (-) False LOC122354401
TU118247 other upstream 1180848 8028606 ~ 8035533 (-) False snrpe
TU118246 other upstream 1186172 8033930 ~ 8035533 (-) True snrpe
TU118263 other upstream 1244642 8092400 ~ 8143620 (-) True G79947

Expression Profile