RNA id: TU117784


Basic Information

Item Value
RNA id TU117784
length 484
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G79622
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 6599346 ~ 6606074 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cctgacacttctgctgaaggccCTTCTGGATCAGTCAGGTGTTCAGGCACCAGAACTGGGCTCCTCGGCTCCGAGATGGCAACGCTGAAGTCAACCACCAAACCTTCTGAGCatgcaggttccagttcagagctgctcacaatggaccattcctcaagatcaaaatgatctggttcatgttccagaggctcagatgttgattcgtgagagctttcattcgggacacacagtgactctgaatccggatccggctgtgctgagagatcacaacgcttatggaagaacgcactaattgtcttcctgactttggcatattctaaaagacaaagaataacaatataagaaacttctttgatccacatattaaacatgtaaagtgtggtcacttttactgtggctcagcgatattatgtgtccaaaaatatgtcgatttggcttaccttgtatcagacatttgtatttgcagctcagtgtaatgctgtat

Function

GO:

id name namespace
GO:0004962 endothelin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117783 lncRNA downstream 31928 6565245 ~ 6567418 (-) True G79621
TU117778 lncRNA downstream 75039 6493541 ~ 6524307 (-) True G79617
TU117723 lncRNA downstream 331761 6267226 ~ 6267585 (-) True G79577
TU117721 lncRNA downstream 393642 6203867 ~ 6205704 (-) True G79575
TU117711 lncRNA downstream 404423 6193831 ~ 6194923 (-) True G79570
TU117787 lncRNA upstream 5837 6611911 ~ 6619237 (-) True G79625
TU117885 lncRNA upstream 525514 7131588 ~ 7141226 (-) True phf13
TU117886 lncRNA upstream 525514 7131588 ~ 7141226 (-) False phf13
TU117976 lncRNA upstream 547391 7153465 ~ 7155263 (-) False LOC122354641
TU117991 lncRNA upstream 662523 7268597 ~ 7327234 (-) True G79768
XM_043251463.1 mRNA downstream 667862 5916996 ~ 5931484 (-) False ccdc50b
XM_043251905.1 mRNA upstream 212458 6818532 ~ 6838832 (-) False per3
XM_043251900.1 mRNA upstream 212458 6818532 ~ 6838832 (-) True per3
XM_043251902.1 mRNA upstream 212458 6818532 ~ 6838822 (-) False per3
XM_043251904.1 mRNA upstream 212458 6818532 ~ 6838772 (-) False per3
XM_043251903.1 mRNA upstream 212458 6818532 ~ 6838688 (-) False per3
TU117706 other downstream 502866 6096133 ~ 6096480 (-) True G79565
TU117068 other downstream 2633569 3962914 ~ 3965777 (-) False si:dkey-197i20.6
TU117044 other downstream 2684711 3913248 ~ 3914635 (-) True G79085
TU117055 other downstream 2776248 3813633 ~ 3823098 (-) False LOC122354343
XR_006252141.1 other downstream 2920420 3678762 ~ 3678926 (-) True LOC122354690
TU117850 other upstream 207551 6813625 ~ 6847758 (-) False vamp3
TU117849 other upstream 233735 6839809 ~ 6847758 (-) False vamp3
XR_006252106.1 other upstream 768280 7374354 ~ 7436471 (-) False LOC122354401
XR_006252105.1 other upstream 768280 7374354 ~ 7436471 (-) False LOC122354401
TU118247 other upstream 1422532 8028606 ~ 8035533 (-) False snrpe

Expression Profile