RNA id: XR_006252105.1


Basic Information

Item Value
RNA id XR_006252105.1
length 2525
RNA type transcript
GC content 0.54
exon number 14
gene id LOC122354401
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 7368372 ~ 7436471 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagggagagagagagctttcTCCCCGTGCGCCGGGTCCACATTTGCACGATGGCATCAGATCCAGGGCTGCTGCCCCTCTTAGTGTGGACTATATCAATGCAGGTTCTGAGCTCCAGAGGAACGTCTAATAACGAAGTGAATCTCCTGGACACAACCAAAACGTCAGGAGACTGGGGCTGGCTCACATATCCTTCACACGGGTGGGATGCGATCAATGAAATGGACGAGTATTTCAGCCCCATCCACACGTACCAGGTGTGTAATGTCATGAGCCCGAGTCAAAACAACTGGCTCAGGACCAACTGGATCCAGCGGGACGGCGCGCGGCGGATCTACATCGAGATCAAGTTCACGCTGCGAGACTGCAACAGCATGCCAGGCGTGCTCGGCACCTGCAAAGAGACCTTTAACCTCTACTACTACGAGACCGACCGAGACGTCGGCACCACCATCTGGGAGAGTCAGTTCTCCAAGATCGACACCATCGCGGCGGACGAGAGTTTCACCAACGTGGACCTGGGCGTCAGGAGACTCAAGCTGAACACTGAGATCCGCGGCGTCGGGCCGCTCAGCAAACGCGGCTTCTACTTGGCTTTCCAGGATATAGGAGCCTGCATCGCTATCGTGTCCGTACGAGTCTATTACAAGCGCTGCACGGGAATGGCTCGCAACCTGGCCGTCTTCACGGACGTGGTCACGGGGGCCGACTCGTCCTCGCTGgtggaggtcagaggtcagtgtgTGGACCACGCGGAGGAGAGGGACACTCCTAAGATGTACTGCAGCGCTGAGGGAGAGTGGCTCGTTCCGATCGGACGATGTGTGTGCAGCGCCGGCTTCGAGGAGCACAGAGACAACTGCATTGcATGTGAGGTGGGTTTCTACAAGCCTGTGGCAGGAGATCAGCTCTGTGGGAAATGTCCACTCCACAGTCACTCTGAGACACGAGCAGCTCTAACCTGCCCATGTGATGCCAACTTCTATCGTTCCTCTACAGATCCATCTGCTTCTCCCTGCACAAGACCTCCGTCAGCTCCGGTAAATATCATCTCATCTGTGAACGGCACCTCGGTCAGTCTGGAGTGGGTTCCACCTCTGGACACGGGAGGCCGCAGTGATGTCATCTATGACGTCCTTTGCCAGAAGTGTGACAAAGACGGGGCGCAGTGTGAGGACTGTCGGGTGGGTACCGGAGGGGGTAACGGGGTGGGAAATGCCAATGGGGGAGCTGCAGACACCAACGGAGCCGTTACCGGGACAGTTGGAGGAGGAGGAATCATGAATGGGGTGGTCGTGTCCCGGACAGGAGCGTCCCTGGTGCGCTTTATCCCTCAGCAGACAGGACTTACAGAACCATGGGTGACGGTGCTGAATCTCGCCGCTCATAGTAACTACACTTTTCGTATTGTCGCTCTAAATGGAGTCACGCACCTGAGCAACGAGCTGCCACAGTCTGTGACGGTCAATATCACCACAAACCAGGCAGCTCCGTCTCAAGTGATGGCCATCCGACAAGAAAACGCCAGTCAAAACAGCGTCACTCTTTTCTGGCACGAACCAGCGCAACCCAACGGAGTCATATTAGAAtatgacattaaatattacgAAAAGGACAACGAGCAGCAAAGTTATGCTACTCTGAAGTCAAAGAACACTAGCGCTAAAGTGTCAGGTCTGAAGCCCGGCACAAGCTACATCTTCCAGATTCGGGCCAGAACCTCGGCGGGCTGTGGGAGATTCAGCCAGTCTGTGGAGATACAGACCGGCAAAGCAACTCCCCTGCGAAATACCAACATGACGATTATCTGGATCTGCATGGCTTCGGTAACGGGACTGGTGACATTTCTGGCCGTTGTCATCTGCAGAAAACGGCAAGAGGAGTACTTTGAATTACGTTGTGGGTACAGCAAAGCTTTCCAGGACTCAGACGAGGAGAAAATGCACTACCAAAATGGCCACGTATCATTTCCAGAAGCCAGATTTTATATTGATCCGCACACATATGAGGACCCCTGCCAGGCTGTCCACGAATTTGCCAGAGAAATTGAAGCGTCCAGGATCAAAATAGAGAAAATCATCGGTTCAGGAGAGTTTGGGGAAGTGTGTTATGGCCGGATGAAGCTCCCTGGGAAACGTGATATCCCAGTCGCTCTGAAGACTCTTAAAGCCGGCTACACCGAGAAACAGAGGAGAGATTTCCTGGGAGAAGCCAGCATCATGGCACAGTTCGACCACCCCAACGTCATCCACCTGGAGGGAGTTGTTACCCGCATAGTGCCCCTTGAAGTTGATGTAGACCACTTCACCCCACGCTGGGGTCCTGATGACCCAGTCAGGGTTTATTTAACGATAACAATCGGATAGACGTACATCACCACTTCACCCACTAAATAATTCACCCTCGGTTggGCAAACCGGTAATGATCATCACAGAGTACATGGAGAACGGCTCTTTGGACTCTTTCCTGAGGAGACATGACGGTCAGTTCACCATCATTCAGCTGGTTGGGATTCTGCGTGGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117991 lncRNA downstream 47120 7268597 ~ 7327234 (-) True G79768
TU117976 lncRNA downstream 219091 7153465 ~ 7155263 (-) False LOC122354641
TU117885 lncRNA downstream 233128 7131588 ~ 7141226 (-) True phf13
TU117886 lncRNA downstream 233128 7131588 ~ 7141226 (-) False phf13
TU117787 lncRNA downstream 755117 6611911 ~ 6619237 (-) True G79625
TU118023 lncRNA upstream 81405 7517876 ~ 7518290 (-) True G79791
TU118006 lncRNA upstream 201971 7638442 ~ 7641186 (-) True G79777
TU118026 lncRNA upstream 240771 7677242 ~ 7741498 (-) False G79792
XR_006252131.1 lncRNA upstream 264954 7701425 ~ 7703761 (-) True LOC122354606
XR_006252132.1 lncRNA upstream 275126 7711597 ~ 7713703 (-) True LOC122354607
XM_043252922.1 mRNA downstream 79904 7290610 ~ 7294450 (-) False c11h1orf50
XM_043252923.1 mRNA downstream 79921 7290610 ~ 7294433 (-) True c11h1orf50
XM_043252919.1 mRNA downstream 88255 7272842 ~ 7286099 (-) True cdc42
XM_043252920.1 mRNA downstream 88255 7275605 ~ 7286099 (-) False cdc42
XM_043252899.1 mRNA downstream 219079 7153470 ~ 7155275 (-) True LOC122354641
XM_043252902.1 mRNA upstream 52812 7489283 ~ 7495714 (-) True nucks1a
XM_043251398.1 mRNA upstream 305774 7742245 ~ 7753814 (-) True mfsd4aa
XM_043251400.1 mRNA upstream 318055 7754526 ~ 7830238 (-) False cdk18
XM_043251399.1 mRNA upstream 318055 7754526 ~ 7813170 (-) True cdk18
XM_043251403.1 mRNA upstream 318055 7754526 ~ 7783710 (-) False cdk18
TU117850 other downstream 526596 6813625 ~ 6847758 (-) False vamp3
TU117849 other downstream 526596 6839809 ~ 6847758 (-) False vamp3
TU117706 other downstream 1277874 6096133 ~ 6096480 (-) True G79565
TU117068 other downstream 3408577 3962914 ~ 3965777 (-) False si:dkey-197i20.6
TU117044 other downstream 3459719 3913248 ~ 3914635 (-) True G79085
TU118247 other upstream 592135 8028606 ~ 8035533 (-) False snrpe
TU118246 other upstream 597459 8033930 ~ 8035533 (-) True snrpe
TU118263 other upstream 655929 8092400 ~ 8143620 (-) True G79947
TU118295 other upstream 759347 8195818 ~ 8196385 (-) True G79967
TU118535 other upstream 1059717 8496188 ~ 8497285 (-) False LOC122353694

Expression Profile