RNA id: XM_043251403.1


Basic Information

Item Value
RNA id XM_043251403.1
length 2673
RNA type mRNA
GC content 0.45
exon number 15
gene id cdk18
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 7754526 ~ 7830238 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCAGGAAAAAGTGAAAGCAGAAAGAACACAGCGCAGAAGGTGTGGTGCCCAATAGTCTGGGTTTACACAGCCTGCAGCCCAGTCCAGTGGCTCCAGACAGCCAGGCTCAATCTCCCACCCAACTGCAGTACCGCAACAAAGTCCAGCACCGCCGTTTCTCCATGGAGGATGTAACTAAGAGGATGTCTCTGCCCATGGATATTCGTCTGCCGCCAGAGTTTCTGAAGAAGCTGCAGATGGAAAGCCCTCCGCCGTGCAAACCTCTCAGCCGCATGTCCAGAAGAGCCTCGCTGTCGGACATCGGCTTCGGGAAACTGGAGACCTACGTGAAGTTGGGCAAACTAGGAGagGGCACATACGCAACGGTGTTCAAAGGCCGCAGCAAACTCACAGAAAACCTGGTGGCCCTGAAAGAGATTCGTCTGGAGCACGAAGAGGGCGCCCCGTGCACGGCCATACGGGAAGTGTCGCTCCTGAAGAACCTGAAGCACGCCAACATCGTAACGCTGCATGACATCATCCACACGGACCGATGTCTCACCCTCGTCTTCGAGTATCTGGACAGTGACTTGAAGCAGTACCTCGACAACTGTGGAAACCTAATGAGCATGCACAATGTGAAGATATTTATGTTCCAGCTTCTTCGTGGTTTATCATATTGTCATAAGAGGAAGATTCTCCACCGGGACCTGAAGCCTCAGAATCTGCTCATTAATGACAAAGGAGAACTCAAACTGGCAGACTTTGGTTTGGCCAGAGCGAAATCAGTCCCAACAAAAACCTATTCGAATGAGGTTGTGACCTTGTGGTATCGACCTCCTGATGTCCTGCTGGGTTCTACGGAGTACTCCACACCGATAGACATGTGGGGCGTGGGCTGTATCCTGTACGAAATGGCGACGGGTCGCCCCATGTTTCCCGGATCCACTGTCAAAGAGGAACTACACCTGATATTTCGCCTCATGGGCACCCCAACTGAGGAGACCTGGCCCGGAATCACAGCTAATGAGGAATTCAAATCCTACCTGTTTCCTCAGTACAGAGCACAAGCGCTCATTAATCATGTGCCCAGgcttgaCACAGAGGGAATAGATCTTCTTACTGCTCTATTGCTGtACGACACCAAGCTCAGGATTTCAGCCGAATCGTCTCTGAAACACTCTTACTTCCTGACTCTGGGCGAGAACATCCACTCCATACCTGACACCTCATCAGTGTTTTCACTGAGGGAGATCCAGCTACAGAAGGATCCGGGACACAAGAGCTCAGTATTTCAGCCACCGGGTCGAGGCAAGAACCGCAGACAAAGCATCTTCTGAGGACGAGAATCGGAGCGGTGTGCGTGAAGAGACGGCCAGAACAAACCCGTTACAAAGCGAACAGCTTCGTTTCTCCATCCAAAACACGCATGCATCCATTCACTCACATACACAAGATTTATTAGAAAGCGGACCGTATAGAAGTCAATCACCCTCAGTCGTAACACGAGCTGGTTTACAAGTTCTCtcctaaaaaaaacccacactgaTCCTAAAGAAATTTAGACTCGAGTTCGGCCTCttctagtagtagtagtattttcaAACGTTCATggtattttttaattgtgcgTGTATGTGCAAGAAACACGGTAGCTTCACGTCCTAATTTTCCCGCCGAGCGCCATTTCCTTCATTTCCGTTTGAGGTTTACTCGTTTTGCCACGTGCGCTCCACGAGTCATTGCAAAAGCTGATATCGCAGTTTATTTCACAAGCACGCTATAAACGTTAAAAATGCAAACGGTCACGTAAACACTCGAGCCGTTGAATAGAGAACTACTTGAACTCGTCGCGATACCATTCAAGTGTATCCGTCTCGAGAAAACAGCATCTATAACCAGTCGCTAATTTACGAAATCTTCGAAAAGGTGCCTTTTGCAGACCGTCGCGAGAGATGAGGGCGGACCGATTTTACGCCTTgcgaaaaaaaccaaaaaaaccatCTACTTCGATCTCCTCGGGGACCTCGGTCCTTTCAAGTAATTGCACATGCAGATATTTCGTTTCGCCATTTGAGCTATTTGCTATTTCGTATTTGCACACGGCATGCGAGTGACTTGGACCTGAAACCTAACGTCGTTCCCTTTCTCCTACTGTATCTCGTAGTTGGAAAATTAAAGCACTATGACTCTTTATCGCAAATATGGCACCGAGCTAGTTTTACAGCGGACGGAAACGAAAAGCTTACTCGTTTAAAGGCCGCGGAAATATCGAGGATGAGCGGCAAAGAGAAAATTCTAGAAAACATAACGAGTCAAAAGGATTTAGTTTAACGTTACTGCAGCAGCAGCACTAATTTATGTGTTTTGTGGTAAatgagaatattttaaatactctATTGAAaagaattaatatataaatatatgtattttgacAAGTGTTTTCTTTATTCTCGGTGAACTTTTGgcagacaaaaaataaataaataaactatggTATTAAATGAACTTAGATGAtgtctaaatgttttataaaagatttagatttttgtatgaaatgtgatattaaatattttgtgtgatttGTCTATTCTATTATGATATTCTGAAGCTGAATGTATTGTGACTGcgaaaatgccaaaaataattaaataataaactaaataaacgaTGACGTTGTTGAACCATGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118026 lncRNA downstream 13028 7677242 ~ 7741498 (-) False G79792
TU118025 lncRNA downstream 13028 7735478 ~ 7741498 (-) True G79792
XR_006252132.1 lncRNA downstream 40823 7711597 ~ 7713703 (-) True LOC122354607
XR_006252131.1 lncRNA downstream 50765 7701425 ~ 7703761 (-) True LOC122354606
TU118006 lncRNA downstream 113340 7638442 ~ 7641186 (-) True G79777
TU118224 lncRNA upstream 170750 7954460 ~ 8004362 (-) True G79920
TU118269 lncRNA upstream 313634 8097344 ~ 8150834 (-) True G79948
TU118266 lncRNA upstream 315441 8099151 ~ 8150834 (-) False G79948
TU118284 lncRNA upstream 360253 8143963 ~ 8144953 (-) True G79957
TU118293 lncRNA upstream 401623 8185333 ~ 8191088 (-) True G79965
XM_043251398.1 mRNA downstream 712 7742245 ~ 7753814 (-) True mfsd4aa
XM_043252902.1 mRNA downstream 258812 7489283 ~ 7495714 (-) True nucks1a
XM_043252562.1 mRNA downstream 318055 7368372 ~ 7436471 (-) False LOC122354401
XM_043252965.1 mRNA upstream 177315 7961025 ~ 7969606 (-) True si:ch211-112f3.4
XM_043252966.1 mRNA upstream 177547 7961257 ~ 7969606 (-) False si:ch211-112f3.4
XM_043252700.1 mRNA upstream 209742 7993452 ~ 8019940 (-) False LOC122354498
XM_043252701.1 mRNA upstream 209742 7993452 ~ 8016622 (-) False LOC122354498
XM_043252697.1 mRNA upstream 209742 7993452 ~ 8009864 (-) False LOC122354498
XR_006252106.1 other downstream 318055 7374354 ~ 7436471 (-) False LOC122354401
XR_006252105.1 other downstream 318055 7374354 ~ 7436471 (-) False LOC122354401
TU117850 other downstream 906768 6813625 ~ 6847758 (-) False vamp3
TU117849 other downstream 906768 6839809 ~ 6847758 (-) False vamp3
TU117706 other downstream 1658046 6096133 ~ 6096480 (-) True G79565
TU118247 other upstream 244896 8028606 ~ 8035533 (-) False snrpe
TU118246 other upstream 250220 8033930 ~ 8035533 (-) True snrpe
TU118263 other upstream 308690 8092400 ~ 8143620 (-) True G79947
TU118295 other upstream 412108 8195818 ~ 8196385 (-) True G79967
TU118535 other upstream 712478 8496188 ~ 8497285 (-) False LOC122353694

Expression Profile