RNA id: TU118023



Basic Information


Item Value
RNA id TU118023
length 415
lncRNA type inter_gene
GC content 0.62
exon number 1
gene id G79791
representative True

Chromosome Information


Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 7517876 ~ 7518290 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


cgggtcttgccccacgggacccggccgggctcagcccgaaacagcggcgtggggccatccccccgtgggcccaccacctgcaggagggaccgtaaggggccggtgccttgtggtttgggtagcagtcgaaggcggggacctcgacaacccaacccctggactcagaatctagttttagggacatggaacgtcacctctctgggggggaaggagcctgagttgttgcgtgaggttgagagataccggctagagatagtcgggctcacctccacgcactgcttggactctggaacccatcttctcgaaaggggctggactcttcactactctggtgttgcccgcagtgagaggcggcaggctggtgtgggcttgctcatagctccccagcttagccgccatgtgttggagtttaacc

Function


GO:

id name namespace
GO:0022612 gland morphogenesis biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU117991 lncRNA downstream 190642 7268597 ~ 7327234 (-) True G79768
TU117976 lncRNA downstream 362613 7153465 ~ 7155263 (-) False LOC122354641
TU117885 lncRNA downstream 376650 7131588 ~ 7141226 (-) True phf13
TU117886 lncRNA downstream 376650 7131588 ~ 7141226 (-) False phf13
TU117787 lncRNA downstream 898639 6611911 ~ 6619237 (-) True G79625
TU118006 lncRNA upstream 120152 7638442 ~ 7641186 (-) True G79777
TU118026 lncRNA upstream 158952 7677242 ~ 7741498 (-) False G79792
XR_006252131.1 lncRNA upstream 183135 7701425 ~ 7703761 (-) True LOC122354606
XR_006252132.1 lncRNA upstream 193307 7711597 ~ 7713703 (-) True LOC122354607
TU118025 lncRNA upstream 217188 7735478 ~ 7741498 (-) True G79792
XM_043252902.1 mRNA downstream 22162 7489283 ~ 7495714 (-) True nucks1a
XM_043252562.1 mRNA downstream 81405 7368372 ~ 7436471 (-) False LOC122354401
XM_043252561.1 mRNA downstream 81405 7368372 ~ 7436471 (-) False LOC122354401
XM_043252560.1 mRNA downstream 81405 7368372 ~ 7436471 (-) True LOC122354401
XM_043252922.1 mRNA downstream 223426 7290610 ~ 7294450 (-) False c11h1orf50
XM_043251398.1 mRNA upstream 223955 7742245 ~ 7753814 (-) True mfsd4aa
XM_043251400.1 mRNA upstream 236236 7754526 ~ 7830238 (-) False cdk18
XM_043251399.1 mRNA upstream 236236 7754526 ~ 7813170 (-) True cdk18
XM_043251403.1 mRNA upstream 236236 7754526 ~ 7783710 (-) False cdk18
XM_043251401.1 mRNA upstream 236236 7754526 ~ 7782513 (-) False cdk18
XR_006252106.1 other downstream 81405 7374354 ~ 7436471 (-) False LOC122354401
XR_006252105.1 other downstream 81405 7374354 ~ 7436471 (-) False LOC122354401
TU117850 other downstream 670118 6813625 ~ 6847758 (-) False vamp3
TU117849 other downstream 670118 6839809 ~ 6847758 (-) False vamp3
TU117706 other downstream 1421396 6096133 ~ 6096480 (-) True G79565
TU118247 other upstream 510316 8028606 ~ 8035533 (-) False snrpe
TU118246 other upstream 515640 8033930 ~ 8035533 (-) True snrpe
TU118263 other upstream 574110 8092400 ~ 8143620 (-) True G79947
TU118295 other upstream 677528 8195818 ~ 8196385 (-) True G79967
TU118535 other upstream 977898 8496188 ~ 8497285 (-) False LOC122353694

Expression Profile