RNA id: XM_043252298.1


Basic Information

Item Value
RNA id XM_043252298.1
length 9934
RNA type mRNA
GC content 0.48
exon number 24
gene id camta1b
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 6848989 ~ 7121128 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTCTTTTACGGTCTCGGTGGGCAGAACAGATATGGGTGTCTGTCAAGCCTGAATTCATAAACGTTCGTCGCATAGACTTAAATATAATCCACAGATTCTGCTTTATGCATATTACAGGCGTCCACTAAATCCCGTCCAAAAACCTCATTGGTCGCTGCGTTGTAAAGGTGTCTCCTAAATAAAACCGATTCACCAATGGCGTGGAGGAGATGGATAAAAGGGGGATATGGATTTCGCAAATTCACGAAGCATCACCGAAAACACCATTGTCATTTATGGCACTTTGCGTCCAATAGCTAACGCGTATTGACGAACGCGCCTCCCGCCGCTCGCCGCGTCCTCGCCGTGAACGCGCGTGGTACCCCCCCGGtcgcgaggaggaggaggaggaggaggaggatgtgGCGCGCGGAGGGGAAATGGCTGCCGAAAACAAGCCGGAAGGACTGAAGAAAATACGTAATCCGGATCGAATGTACAGAACCGCCGTCGGTTACACGGGCCACGTTCCTCCTAAGAGTGTCAGCGATGACACAGACAACAACAATGAACATGGACATTTGAAAATCTACCTGCCCAAGAAGCTTCTGGAATGCCTTCCCAAATGCTCCTCCCTGCCCAAGGAGAGACATCGCTGGAACACCAACGAGGAGATTGCAGCCTACctgattacatttgaaaaacatgaGGAGTGGCTGACGACGTCCCCCAAAACCAGgcCGCAGAATGGGTCTATGATCCTCTACAACAGGAAGAAGGTGAAGTACAGAAAGGATGGCTACTGCTGGAAGAAGAGGAAAGATGGGAAAACCACGCGGGAGGATCACATGAAGCTCAAAGTGCAGGGAGTCGAGtgtttgtaTGGCTGCTATGTCCACTCCTCCATCATTCCCACCTTCCACCGCCGCTGTTATTGGCTGCTGCAGAACCCTGACATTGTGCTGGTCCACTACCTGAACGTGCCCGCTATAGAGGATTGTGGGAAACCATGCGGGCCCATCCTGTGCTCCATCAACACAGATAAGAAAGAGTGGGCCAAATGGACCAAGGAAGAACTCATCGGGCAGCTCAAACCCATGTTTCATGGCATCAAGTGGACTTGCAGCAACGGGAATAGCAGCACTGGCTTCTCGGCAGAGCAGCTTGTGCAGCAAATTCTGGACAGCCACCAGACCAAGCCACCTCCCCGGACTCACAACTGCCTCTGCACGGGAAACCTGGGTGCTGGGAGCAGCCTGCATCACAAATGCAACAGTGCCAAACACCGTATCATCTCCCCGAAAGTGGACCCCCGCACTGGAGGAGCTTACAGCAGCACCCACTCCGAGGTTCAGAACAACGATGTGTCGGAGGGAAAGACGGAGCACAGCCACGGCGGGGGCAAAAACGGCAGGGCAGGGGCAGACGGTGCCAGTGGGACGGGCGGCCGAGAGAAAAGGAACGGCAAAGTGCACAAGCCATCGCTGCTCCATCAGAACAGCATGGAGGTGTCCTCATCCAACCAGGTGGAAGTGCCAGACACCACCCAGAGCTCACCCGTCTCCATCAGCAGCGGGCTAAACTCAGACCCTGATATAGCCGACAGTCCCGTGGTGACAGGAATGGGCCACGTAGCCTCGGTAATGAGCAGCCTGTCTCAGTCCACCACTGTATTCATGTCAGAGGTCTCTGGAGACCCTGTCTATAGCATGTCTCCTACTGTAGACCCCAACGCTCACCTCTTGGGGCCCGACACAGCCTCGAGCAGTCTGGTTTTAGCAGTGACAGCCGACAGTCACAAATTTGCCTTTGCTGGAGCAGTTGGAGTAGGTTTAACAGATGCAGGATCCACCGACGGACTTGCTATGCTGTCCACAGCTGGTGTGCCTGAAGAACTGGTGCTGTCTAGTAACCTGGAATCTGGGAGTATCAAGCTGCCCGAGACTAATATGAACTTTGATCCTGACTGCTTCCTCAACAACCCCAAGCAAGGTCAGACTTATGGAGGGAATGGGATGAAAACCGAGGAGAGCAACGGGAGCAGCTGCAGTAATGGAGGGCTGAGGTGTTCCCCGCCGCTCAGTGACAACGGCTATGGCTTTAATACGGCTCTGGTGAAGAACATCAAAACGGAGGACACATCGTTTGAACAGCAGCTGGCCAAAGAGAGCGGTTATCAGGTTGGAGAAGTTGTGAGCGGGGCTGTCAGTATGCCTGGTTCCTCGAACGGCGGTTCGGGCCAGAATTCCCTGGCTTTGACTCCTACTGGTTCGCTGTTGCCATCTGGAGGTGGACTTAGTCCCAGCACCACCCTTGAGCAGATGGATTTCAGTGCGATCGATGCCAAACAAGACTACCCATCCAGCGTAATGTCAGCGGCTGGCTACGGCCAAGCGATTTCCGGCTCTCACCTGGCCCACCAGAGTCACTCCCCCAGTTTCTTCCTGCAAGGATCCCCACAGTCCCAAACCCAGAACAACTCCGGTTCCACCCAGAACTCACATGACTCCAATGCCTACATGGGCCTTGTCAAGACAGACTCGACAGGAACAAATGGACatctccaccaccatcatcacaCCCACCCCAGCCAGCACACTGCCTCTAACTGCAACGGTGGCTCTCCAACTGAAAGAAATGGACCGGCCGGGTCACTCCAGCTTCTGCAGTACCAGAACCGATTTCCAACAGCGGGTCAGGAGCATGAGGAAGTGGCTGGTTTGGAACAGCCAATAGGAGCAGAACAGAGAGAAGGAGGTGTTCAGGAGAAGGACTCGGATGGTCTTATGAAACCAGGGGAGCACTTGCAGACTGGAGAAGGAGGAGAAGCCGAGGGTGTGGGAGGCGCAGAGCACTACCTCCAGCAATCAACGGAAGGTGGAGGAGTCGGGCCGGGACCAGGAGGAACGAGTGCAAGGGCGGAAAGTGGAAACCTGTGCAATGACGCTGAGGGAAGTGGAAGCACCAATCAACAGCTCCAGCCTCTCCTACAGGGAGCCGGTTTGGTGCAGGGGCTTTTTAGCACCGTGGGTGCCCACCAGAGCCTGAGCGGTGGGGGAACAAATGGAGGGGGCTCCATGGAGATTAACCTGGACCATTTTGATGTTTCCTTTGGGAATCAGTTCTCAGATCTCATTAATGACTTCATTTCAGTAGAGGGTGGAAGCGGAACGGCGGTAGTGGCGGGAGCCAACGCTCTCTACAGCCATCAGCTGATGACCCATTCAGGAACAGAGGGGCAGGTCTCCTCTGGAGCTGCTGCTCAGCAAGGTGCAGACGAAGTAGCTCACGGGGCAAGAGGGTATAATTCTGCAGACCTCTGTCTCCAGTCCTGTTGCAGCCCTCAGTCCTCGCAGGCTGGGGCAGTGGCAGGTGAGGCAGGGCAGCTGGCATATATGCAGGTGGCCGAGGCCGTGTCAGCAGCAGTGGCACATGGAAACATGGGAATGTTGCAGGCTACCGGAAGACTGTTTGTGGTGACAGACTATTCTCCAGAGTGGTCTTATCCTGAGGGTGGTGTGAAGGTGCTGATCACCGGTCCGTGGCAGGAGGCCAGCAGTGAATATACCTGTCTGTTTGATCAGATAACCGTTCCGGCCTCCCTCATCCAGCCCGGGGTGTTACGCTGCTACTGCCCAGCTCATGACACAGGCCTGGTGACCCTGCAGGTGGCAGCCAGCAGTCAAATCATCTCCAATTCTGTGGTGTTTGAGTATAAAGCCCGTGCCCTGCCTGCCCTGCCTTCTTCTCAACACGACTGGCTCTCACTGGACGATAACCAGTTCAGAATGTCCATCCTGGAACGCCTAGAGCAGATGGAGCGAAGGATGGCAGAGATGGCCGGTcagcagcagctgcagcagcagAGCAGTGGAGGACCGTCTGAGAGTGGAGGAACTGGaacaggaggaggagaaggaggaagAAGCAGTTCTGAACAGGCACAGTTCTCACCCGTTCAGGGTCAGAGCCAGGGTCAAGGTCCTGCTGGCAACTCCTTTGAGAGCCGTGTGGTAGTGGTTTGTGAAAAGATGATGAACCGCGCATGCTGGGCTAAGTCTAAGCACCTGATCCACTCCAAGACATTCAGGGGCATGACTCTTCTTCATCTAGCAGCTGCCCAGGGCTACACCACCCTTATCCAAACACTTATCAAGTGGCGCACTAAGCATGCAGACAGTATTGACCTGGAACTTGAGGTTGATCCTCTAAACGTGGATCATTTCTCTTGCACACCACTGATGTGGGCTTGCGCTTTGGGTCATATGGAAGCAGCAGTGGTTCTGTATAAATGGGATCGGCGAGCTTTGGCCATCCCAGATTCTTTGGGTCGCTTACCGCTGGCTATTGCTCGGTCTCGTGGCCACACCAAGCTGGCAGAGTGTCTGGAAAGCCTTCAAAGGGAGGAGCAGCAGTCAGGAGCACTAAATACAACTCCCAACATGCCTTTCTCACCATCTACAGAGGCCTCAGGTGCAGAGGGGTGGATGAATGTTTGGGGTTCAGAAACATCTTCAGTTGGGCTGAAAGGAAGCAACAGCACTAGTTCTGCTTCCAGTTCCAGCTCAGACTTAAGGAGACCCAGGTCTGAACCATCTAGTTTCTATAGCAGTGTTAGTCACGGGGATGCCCCGTTGAGCAAGAAACATAAACCCAACCCAGAGACCCTTCAAACTCGGCCCAGCAAATCCTGCTCTGCCCCTATCGGACTAGAAGAACAGGCCCACAAGCCTAAAATGTGCCCTTCTAAACCGCGGGAAGGCACTGCGGAGAAAGAACAAGGAGATGGTGAGCAGTCTCAGACTAAGCTGGGCTCAACTTGTGGAGGTGGGTGCTGGAGTTCCAGACAGACTGCAGGACGTAGAGTGCCAACTGTAGGACTTGGCAAGGAAAGGCTTGCGAACAGACTGAGATTAAGAGAGATTGCTAGTGCGGGAACAATCTCTGATCTGCGGACAACCCAAGAGGATCTGGAGAACACAGGAGATCTGCAGAACATGAACATGATGACTTTAGCAGAGGAGGTCATTGAGGCGACATCTGATCGCATCAAGAGGGAAAACTTTGTTGCATCCGAAACTACACTGGATGGTGTTGGAGTCAGCAGCACCATGAGCTGGTTGGCTAGTTACCTTGGAGATGCAGAGAGGTTCCTGTTTAACAAGCCCCTAACTTCCTCTCCTGGCCTGGGCCCAGTCCACGGTGGAGGACAGCCAGAACTCGATGGTCCTCTTGGGAAACTAGGTCTCCAGACCCCCGCTGAATGGACTGCGCTCCTCAATGCCTCCCACAACAAGGAGGAGCGTGACCTGACCCAGCTGGCTTTGTCTGATCCCGAACAGAGAGAACTTTACGAGGCAGCCCGGCAGGTCCAGAACACCTTCCGCAAATACAAGGGTCGTCCACTTCGGGAGCAGCAGGAACTGGCAGCTGCTGTCATTCAGCGCTGTTATAAGAGGTACAAGCAGCTGACATGGATAGCCTTGAAGTATGCACTTTATAAGAAGATGACGCTGGCCGCCATCCTTATCCAGAGTAAATTCCGCAGCTACCACGAACAGAAGAAGTTCCAGCAGAGTCGCAGGGCAGCCATGCTGATCCAGCAATATTACCGCAGCTACAAAGAACTTGGCCGGCCAAACCCACGCAGCCGGGCCACTGCAGCTGTACTGGTGCAGCAAAAACTCAGaaGCAGTTTACTGACCAAGAGACAAGACCAGGCTGCCAGAAAAATAATGCGGTTTCTGCTGCGGTGCCGTCACAGCCCCTTGATGGACCATAGACTATTCAAACGGGGCGAAAGAATTGAGAAAGGCCAAGGAACATGAGAGCGCCGCAAAGAGCCCCGTCGCAATGTAACATCTCCGAGCGGACtccacctcttcctcttcattgCGTTTttatcacaaacaaacaatttacgaaaaaagcaaaaattaatCAGGAAGGGGGACACGGAAGATCATCGGATACGCGACGGCCGAACTCTAGCAGCGTTGTGACTGATTCTGCTCCTGCATTGTGTATTTTCTTGCTACCGGGGAACTGAAATCAAAACTATTGGGGAAATATGACATTATCTTCATGGCATTTTTGCACTCttcatagatttttttctttagattaCAAAAAATGAAGGAAGACCAAGGAGCAAAGGCTTTTTGTTCCGACGATGCTTGTAAAATACCACGCGACATGAACAGATCAACGTCAGAAAAACGTCATGCTGGAAGCCGCttcagattacatttttatattttgaaaggaaaaaaaaaaaaaaaaaaagaacaatcaaCAAgtttgggggggaaaaaaagaacaaaacctAGAAAATGTAAACCAAAAAAAGGCCTCATTTCAATGACCATATGCATGCAGAGTATTTGAAATCTGTCTCTCATCTCCACAAAtctttgtttttgacaaatgCTGTCCGTTCATTCAAAGGGAAGCCTTCATATGAATGTAGATGGGGTCAGGGCAAAAATGCTGGGTTTGAAATATCAGTGTCTTACCTTTGTCTTTATGGGTGTTAGGGGACTTCTGACAACAAATTGGGGGATTGAAGCGAAGCCCTCTGGGCTACTGTTTCGTGTGCACTGTTTTCGACTTTCTTATGGGTCCTTTTCTTAATGTCATTTTTGCTGGCCTGACTTTGTGTGTCCTGTGTTTGTTGAATTGAATCTGGATACAGTGCATGTGTTTGAGCAAAATGCTCCTGCATgctatgtaaatgttttgtgttttattttcattcattcatattggTGATATTGTGGCACCATCAAACTAGACCGTATACGCCTGTTTGTTTTCGAGTATATTGTTATAAAgaccattatttttatatagttcatttatttattagctttatttactttttttgcctTTAGCATTATtgcgtttttttattattattgtgtgaaGGTTTTAAATAATCTCCTTGTTTTAAAAACTGACCTTTTTTAATGTGAACTGTACTATCCATTGTGCCACAGCGCCAAACGTATATTTGCAAAGGTTATCttccatttttgtgtgtgtgtgtgtgtgtgtgtgtgttgtgataCGTTTCTTCATTGTTACTGTTGGTTGATTTCGAAGAGCTCCAGAAAGCCGCCACAAGCTTTCCCGTGGAGTTTCACTGAACATTGCCTTGACTTCTTGACTTTTTGAAGGGTCCCTATACAgaagcttcaaaaaaaaaaaaatccatatttttgACTATTTAAGTGGTCCCTGTACATATGAAGATGGGTGAAGGAACATTGATAGCCAGAAACTTTTTCCGAAGAGGATTGTATTTAAgaatatatagtattttattcataaattggattataacacattaagagacaaacaaaaaatatattgtatagtTTTCTTTGAACGCCCAAGATGTACGGTTGTAttgtttgtaaatattgtaaatactgGTTGCGAAGAAGGAGCCATGTGCATGAAACTTTAAGACATTGAACATAATGTAAAGATCAAATGTAGTGGCAATGGTCtgtaatacgatttgaacaactTCACTGTAAGACTTTGTTGAAAATGTTCTTTCACAGAACATTCTCTGAAGCATGATTCACGATAAAAACCGTAGATTTAGCGGAAGAGCCAAAAGAAATCCATCAGACACAAGATCTTTCTTTTTCAGGGTTAGCggaaataaaatagtattttgtttttgttttgtttttttttttcaccgaTGGTGACCAGTCATGTGAATGCTACAGGACTTAAATAAGCTATTCCTTTGAGAAGTATTGGAAGAACTAGTATTGACTGACCAAACTTCACTCACACAGTTACAGCTGAGGTTTCTACAATACAGGGGATGAAACGTCTCCACGGTTTTGTCTTGTATAACATAACTAGAAAGTGTACTCGCATTTTGAACAATGGATGGAGTCAGGAGGTTAAAAGTAGGTcgtgcaattaaaaaaagatgttgaCGTGAGGGTTGTGAATGGTTATTTCCTGCAGGCGATTCCCATACACGTGCTTACATGCTAGAATCAAACACTGAGAGGCCACGAAAAACGGTCACGGATACATATTGTGAATGTAGCTTGAAACGCGTACGTTTCGACTCTCATCAGAATCGACGGACTGTCATGTTCATAGCTTTGTTTCCGATCGTTTCCTCATTTCTTGGGGGGCTGCTACCAACTTTCAAAACCCCACGGTTGAGTCATACAGAATCATATCGATTTCTTTTGTACGTTTTTTTCCTTACGCTCGTGCCAGCTACATGGAAATAAGCGTCTTTCGCAAATTTCTCAGAAAGAAATTTGAGTCTAACTGACCCCCTGAACTTCCAAAAGCGATTTCAGCTGACGAGAGGCATCATTTTAACTTACACCAGCACATTTTGCCTGTTAAAGAAAGGAAGGACGAGGAAAGAATGTGGTGCTTATCTGCTGAATTATACCTGTGTAGTTTCATTTCTATTCCCCACATGTAAaacattcattgtttttataagTTAAATGTTTCCTCATGATCTCAGAGACTCAGTATCAGTATTATTATAGAAAGTGCCTAAAACATTCAACTGATATCAGGAGTGTGTTGTTCCTGAAGAAGTCCATATGAACCGATTGCTCTTTTTTAACGGTATGCAACGCTAAAGGCTGGTTTTACTGTCCAAACAGAAGCCCAGGTCTGTTTTCTCCTCTCACACCTTTTTCACTCCTTAAACACGGACTCAGAGTGTGAAGGCacctgtcatttttgttttttgtccccCGCTCATTCTGATTAtgtctccaaaaaaaaagactttgagTGACCCGGTAACATACTATGCATGCTTTCATTATTTCcttcattctttctctttttccatgTCCGATCTAATCTGGGCCAGGAAAGTAGGACACGCTCAGTGTAATTGGCGCATTACGTAATACCTTCATCCGGTTGCTAGTTTCAAGTCCGAGCACAACTCCAAGCGAAGGTGGCCGCCCTTTACGCCCCTTTCCATCCGCCCGACTTGAAACTTCAGGAAATCATAAGCGAAAGTCCTCAGTATTCACCAGGAAAAGCTGTTTATGGACCACCAGGTATATGTATCTCAGTTTGGGTCATTCGTCTTAGGGAAGGGAAAAATCTGCCTCCCTTTTGTAGTTTTACTCAGGGTGCTAAAACAGGGAGATGGTGTTTAGCATGGAGActagattaggttaggttaagttaagtCTCCAGGTTCAGCTCAGAATCAACAGGAGAAACCACTGGGAATATGTACTTCCATTGTTACAAAACCACTGCGTTCAGAGACTCGCCACTCGGGTAACAGGATAGACTGTATGTTTATAGAGTTTTTAGACCATTTTTTCCAAAACTGAGCAGGTATCATCATTCGTGCAGGTATCACCGCTCATTTAGTGTTGCCATATCCCCATGGGATTGGGAATGCATAAGTATACCTCAGCGCCAAATACCTTCAGAATAAGGTGGGAGATCCCGTCCTCTTATGAAACAGCTCAGCATACGTGCATCCGGATCATGCTTTCCGTATTTTTGTGTCAGATAAGAGAAATATGCACTTTGTACAGCTCACCATCCGAGTTGAATTCCCTCCGAGCCCTGGTACGTTGTAAGCgcgtctgcatgtgtgtgtgtttgtttgtgtgtgtgtgtgcgcgtgtgtgtgtgtgcgtgctttaTCTCGACGGATGACCACATGAGCACATGTGAAGGTTATAACAAAACGAGGGAAAAGTAGGAAGTTTGTACGATGTCCTAAATCCTCTCTTTGGAACTCCGGAAATGCAGGTTAGACttaaacagaactgaaaaaaaaaaaaaaaaaaaaaccactcgATTATAAGCTTTTCACTTACAAGTACAGAGCAATAAACACTTTGTTTTAGACAAGCTCTTTAGGTTGAAAGAATATGGATAggtcaaacataaaaaaaaaataaaataaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117767 lncRNA downstream 115129 6331954 ~ 6733860 (-) False G79608
TU117766 lncRNA downstream 115129 6340026 ~ 6733860 (-) True G79608
TU117787 lncRNA downstream 229752 6611911 ~ 6619237 (-) True G79625
TU117784 lncRNA downstream 242915 6599346 ~ 6606074 (-) True G79622
TU117783 lncRNA downstream 281571 6565245 ~ 6567418 (-) True G79621
TU117885 lncRNA upstream 10466 7131588 ~ 7141226 (-) True phf13
TU117886 lncRNA upstream 10466 7131588 ~ 7141226 (-) False phf13
TU117976 lncRNA upstream 32343 7153465 ~ 7155263 (-) False LOC122354641
TU117991 lncRNA upstream 147475 7268597 ~ 7327234 (-) True G79768
TU118023 lncRNA upstream 396754 7517876 ~ 7518290 (-) True G79791
XM_043252691.1 mRNA downstream 1199 6839820 ~ 6847790 (-) True vamp3
XM_043251902.1 mRNA downstream 10167 6818532 ~ 6838822 (-) False per3
XM_043252536.1 mRNA upstream 10456 7131578 ~ 7141236 (-) False phf13
XM_043252899.1 mRNA upstream 32348 7153470 ~ 7155275 (-) True LOC122354641
XM_043252919.1 mRNA upstream 151720 7272842 ~ 7286099 (-) True cdc42
XM_043252920.1 mRNA upstream 154483 7275605 ~ 7286099 (-) False cdc42
XM_043252922.1 mRNA upstream 169488 7290610 ~ 7294450 (-) False c11h1orf50
TU117850 other downstream 1231 6813625 ~ 6847758 (-) False vamp3
TU117849 other downstream 1231 6839809 ~ 6847758 (-) False vamp3
TU117706 other downstream 752509 6096133 ~ 6096480 (-) True G79565
TU117068 other downstream 2883212 3962914 ~ 3965777 (-) False si:dkey-197i20.6
TU117044 other downstream 2934354 3913248 ~ 3914635 (-) True G79085
XR_006252106.1 other upstream 253232 7374354 ~ 7436471 (-) False LOC122354401
XR_006252105.1 other upstream 253232 7374354 ~ 7436471 (-) False LOC122354401
TU118247 other upstream 907484 8028606 ~ 8035533 (-) False snrpe
TU118246 other upstream 912808 8033930 ~ 8035533 (-) True snrpe
TU118263 other upstream 971278 8092400 ~ 8143620 (-) True G79947