RNA id: TU13216



Basic Information


Item Value
RNA id TU13216
length 362
lncRNA type sense_over
GC content 0.33
exon number 2
gene id LOC122355284
representative False

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2075298 ~ 2128540 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ttttttttctttttttaatttttaaactgGGTTTTATTGGTGGCGTGCTAACATTGGTCTGCttaatacaaacataaaaaattaatcttCTGAAATGCGGGCAAGTCTTGTACAATACAAAAGTGTTTGCCAGAAAAAGAACAAAGGCGTTCTTCACCCAAGTAATAGGAAATATAgataaaaaagtctttttaatgGCACAATCCATTTGAGGGAGAGGTACTAATGGGAAGATACAGCTCATTTGCGTGTCTTCATTTTCTTCCTTGTCTCCTTCCCTGGCcgtttctataaaaaaaaaaaaaaaaaaaagagagagaaagagaaaagaaatgaaaatgtgtgagggaggtttttaaaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU13011 lncRNA downstream 23263 2050430 ~ 2052428 (-) False tmem125b
TU12998 lncRNA downstream 41081 2025802 ~ 2034610 (-) False slc1a7a
TU12976 lncRNA downstream 85056 1990399 ~ 1990635 (-) True G8643
TU12975 lncRNA downstream 86616 1988847 ~ 1989075 (-) True G8642
TU12973 lncRNA downstream 88621 1985568 ~ 1987070 (-) False G8640
TU13235 lncRNA upstream 42087 2170627 ~ 2170950 (-) True G8839
TU13244 lncRNA upstream 51299 2179839 ~ 2180207 (-) False G8845
TU13245 lncRNA upstream 51299 2179839 ~ 2180676 (-) True G8845
TU13246 lncRNA upstream 53712 2182252 ~ 2184705 (-) True G8846
TU13248 lncRNA upstream 57109 2185649 ~ 2186096 (-) True G8847
XM_043256269.1 mRNA downstream 5164 2056567 ~ 2070527 (-) True LOC122357078
XM_043257105.1 mRNA downstream 19982 2050977 ~ 2055709 (-) True tmem125b
XM_043257076.1 mRNA downstream 36986 2016408 ~ 2038705 (-) True slc1a7a
XM_043260626.1 mRNA downstream 78784 1991585 ~ 1996907 (-) True aldh9a1b
XM_043253625.1 mRNA upstream 29909 2158449 ~ 2169321 (-) False LOC122355393
XM_043253616.1 mRNA upstream 29909 2158449 ~ 2169320 (-) True LOC122355393
XM_043257903.1 mRNA upstream 60970 2189510 ~ 2204382 (-) True LOC122358118
XM_043219833.1 mRNA upstream 170330 2298870 ~ 2301360 (-) True insl5b
XM_043258567.1 mRNA upstream 332769 2461309 ~ 2465921 (-) True LOC122358726
XR_006247870.1 other downstream 690525 1385097 ~ 1385166 (-) True LOC122328981
XR_006247864.1 other downstream 690816 1384697 ~ 1384875 (-) True LOC122328955
XR_006247866.1 other downstream 691416 1384090 ~ 1384275 (-) True LOC122328960
XR_006247871.1 other downstream 691907 1383708 ~ 1383784 (-) True LOC122328985
XR_006246996.1 other downstream 872704 1179945 ~ 1202987 (-) False dipk2aa
TU13282 other upstream 310821 2439361 ~ 2441713 (-) False G8880
TU13285 other upstream 311584 2440124 ~ 2441713 (-) True G8880
TU13346 other upstream 313644 2442184 ~ 2443319 (-) True G8913
TU13363 other upstream 348173 2476713 ~ 2502739 (-) True G8921
TU13373 other upstream 388239 2516779 ~ 2517260 (-) False LOC122358781

Expression Profile