RNA id: XM_043253625.1


Basic Information

Item Value
RNA id XM_043253625.1
length 3145
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC122355393
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2158449 ~ 2169321 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAACCCGCCTCCTGTTCCACACACAATAACAGTGCTTATGTTTTGCAAGAATTTTACATTGGCATTGCTTGAATGTCTTTTGTCTGCCTTCCCCTCTGAAGCCTCTCAGAAGAAGGAGAAAAGTGAAGAGGTGAACAGGCTAAACTCCAGCACAGAGAGGACACAATGGCACACTTGTGATGTTTAAGGTTGCCGGAGGACTAAAACCACATGAAGCTGAAAACAGACTTATGCTAAGAACAATGGAAATCAAAAAAGagaATGGAATCTCTCCAAAAGAGAACGGTAGCCAAAGAAGACCACCGTCCTATTCTGTAGAGACACCCTATGGGTTCCATCTAGACCTGGACTTTCTCAAGTATGTTGATGACATTGAGAAAGGTAACACCATTAGGAGGGTACCAATGCAGAGAAGGCAAAGAGGACGAAATAATGGTGTCTTGTCACGTAACTTAAGTCTTCCGGGTTATGGATGCAGAGCTACAGAGTGGAACTCAGTAAGCACGTTATGGCCCAAAACCAAACTAGGAGACTCTCAACAACATTTTGAGTTTCGATCTAGTGACAGTGTGTCTGCTGGCTATGTCAGGAGGGGAGAACCCATCTACAAGTCCTTTACAGCTGCAGAGATGGAGGCTTTTGATGAGCAACCCTTAGGATGTTACGTCAGGCCAAATCTCTTGAGAGCCTCCAGTTTACCCTTGACTGTTTTACTGAGAAAGCGCTCAGAGTCAACCGAGGATCCAACCAGCCCCAAGGAATATCTAATGCATGAAAACGGTTCCTCTGAAGATATATTCCATGTTTCCGACAACAGGATAGGTAGAGCAAATGGGACCCTCCAGAGGCTGACTGCAGCTCTTGAACGAGTTGGGGAATTGGAAGAGGAGATCAGAGTCGTTCCTGAGCTCAAGGCGCAGATATGTATTTtggaagaggagagagagagacttttaCTCCAGTTACATTCCCGAAACAAAACCACCGGGCCACAGGATGTTCTACACATAAATAACTGGGACACTCCTTTATCTGCCAGAGAAAATCAAGACAAAGCAAGTGATGACTGGATGAATCGAGAATATGACCGATTAGAGGAAAATGTCAAGGCCTCGTCTGAACAAGTTGAAACAGTTGCAATACCTTCAGCTACTGAAAGAATCCTTCCAGAGACCGAAAAGCGTAAGATGGTCTCTCGAGAAAGAGATCTCTTGGATAATGGAGACAAAGCTAAGTCTCTCACCGAAACTCTCCAGAGGAAAGTTGTTTTGCTGGAACAGAAACTCCATGAACTGGAGGTAGAACTGGACAAGACCAGAGCTTTCCTAAAGCAGCAAGCAGAGGAGAGTCTTCTGAAGGATGACAAGATCAAGCAGTTGACCGTACAGCTTGAAATGGGACACACACTGGCCAAGGTGATTTCATCTGAGAGCTCCTTAGTAAGTACACAAAGTCTTGTACCTGTGGTAGAATTGCAGGAAAGTGGGCAAAAGATGCCAGCAGATGAGGGAATTGCCCTTAAAGTTCGGGATCAATCTGCAGTATCACATGCAGACATGGAGCACCATGTGAAAAGATTACAAGAGCTCCTACAGGAGCAGTGGGAATGCCTTTGCAAAGACGACTCATCAGGGAAAATGTCTTCAGATCACTTGCCTCCACGTGTCTGCACTATTCAAGAGCAGTTAACAACTTTAATCACCCTCCTTACCCTCTACGTGTTTCCTAATAGTGATGCATCTCAAGCAGGAGAAAACCCCAAGGCAGAACATCTGAAGACAATTAGCATAAGAGACAGTGGGAGCGTGGAGACAGAGGGAATAAGTCATGCCATCAAAGTACAAGAGCATTCAGAAGTGGATGTTGGCTTCAAAAAGAATACGACTAAAGAAGAAGACAAATTATGGACCTCATGGACAACAGATTCCAGCATACAAGCACACAAAAGTAAACATGCAGAATTCAGTTCAAAAGAAAATGCCGCAGATGTAGAGACCACAAAACAAGAATATCTGCGAAAGCAAACAAGTCCAGCAAGAGCTCTAGAAGATCaaacagaggaagagaggaaggaCTGCATTTCGTTGAGCATGAGCTCAGATCAGAAATCCCAGACAATGAAGCAAAACAGGGAAGCTGTTGATAAAGATTTCATAGATGCATGTTATTTCCTGAGAGACCACATGGGAAAAGTGTCAGAACCTGATGATGAAATGAGCCAGACTCTCACTGTGCTGTTCCAGCAGTGGTTTCACGTCTCTGCTGAAGAGGGAGCATGTGCTGACACTGTTGCTGTGTATCTCAATGAGGTTAACTCACAAACACCTACAGTCCTTCAGTTCCTGGTCAACATGGCAGATGATAATGGGAACACTGCCTTGCATTATAGCGTGTCAAACTGTAACTTCAACATCGTTAAGCTCCTTTTAGACACAGGTGTATGTGACGTGGACCTGAGAAACAAGTCTGGCTACACTGCGGTCATGCTGGCCTCACTGACAGCTGTAGAAGAACCAGGAGACATGAACGTGGTCCAGCAGCTGATGGAGCTTGGTGACGTTAACGCCTGTGCTGGCCAGGTGGGACAAACAGCTCTTCACTTGGCAGTAAGGCATGGACGTGTCCCAATGGTGCGTCTCCTGCTCGAACAGGGAGCGGATCCAGATGCCCAGGATCATGCAGGAACCACTCCACTGATCAGCGCCTGTGATCGGGGACACGTCAGAATTGTGCGCATTTTGTTAGAGGATGCAAACTGCGATGTCACTTTAAAAGACAAGGGCGGTCGAAGTGCATTATCCCTGGCGACACAGGCCTCTCACACAGAGATAGCGGACCTCCTGAAAGCCCGCACAGAAAGCAAGAGCACAGACAAATGCAAGGTCTCTTAGAACGGAGCTTGGGCGTCTCAGTCATATACACTTCAATAATCAACCATGTACAGTTCCTGCTAAGACGATCAGCAATTAAATGTCaatattctaatttaatattcaaGGAGTTTGAAGCAGTTTGCTAATGTAAAGCTCACCGATGTAAATATAACAGCCAAATGTGCGTCTTTCCTATAAATCCAAATATGTTGTAACCAACCCAGTTTCATTCTGAGTCATCTCATGTCAATAAATGAAACTATTCTATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13216 lncRNA downstream 29909 2075691 ~ 2128540 (-) False LOC122355284
TU13214 lncRNA downstream 82282 2075298 ~ 2076167 (-) False LOC122355284
TU13011 lncRNA downstream 106021 2050430 ~ 2052428 (-) False tmem125b
TU12998 lncRNA downstream 123839 2025802 ~ 2034610 (-) False slc1a7a
TU12976 lncRNA downstream 167814 1990399 ~ 1990635 (-) True G8643
TU13235 lncRNA upstream 1306 2170627 ~ 2170950 (-) True G8839
TU13244 lncRNA upstream 10518 2179839 ~ 2180207 (-) False G8845
TU13245 lncRNA upstream 10518 2179839 ~ 2180676 (-) True G8845
TU13246 lncRNA upstream 12931 2182252 ~ 2184705 (-) True G8846
TU13248 lncRNA upstream 16328 2185649 ~ 2186096 (-) True G8847
XM_043253388.1 mRNA downstream 76949 2075896 ~ 2081500 (-) True LOC122355284
XM_043256269.1 mRNA downstream 87922 2056567 ~ 2070527 (-) True LOC122357078
XM_043257105.1 mRNA downstream 102740 2050977 ~ 2055709 (-) True tmem125b
XM_043257076.1 mRNA downstream 119744 2016408 ~ 2038705 (-) True slc1a7a
XM_043260626.1 mRNA downstream 161542 1991585 ~ 1996907 (-) True aldh9a1b
XM_043257903.1 mRNA upstream 20189 2189510 ~ 2204382 (-) True LOC122358118
XM_043219833.1 mRNA upstream 129549 2298870 ~ 2301360 (-) True insl5b
XM_043258567.1 mRNA upstream 291988 2461309 ~ 2465921 (-) True LOC122358726
XM_043258655.1 mRNA upstream 342286 2511607 ~ 2517254 (-) True LOC122358781
XM_043258584.1 mRNA upstream 348394 2517715 ~ 2519534 (-) True LOC122358747
XR_006247870.1 other downstream 773283 1385097 ~ 1385166 (-) True LOC122328981
XR_006247864.1 other downstream 773574 1384697 ~ 1384875 (-) True LOC122328955
XR_006247866.1 other downstream 774174 1384090 ~ 1384275 (-) True LOC122328960
XR_006247871.1 other downstream 774665 1383708 ~ 1383784 (-) True LOC122328985
XR_006246996.1 other downstream 955462 1179945 ~ 1202987 (-) False dipk2aa
TU13282 other upstream 270040 2439361 ~ 2441713 (-) False G8880
TU13285 other upstream 270803 2440124 ~ 2441713 (-) True G8880
TU13346 other upstream 272863 2442184 ~ 2443319 (-) True G8913
TU13363 other upstream 307392 2476713 ~ 2502739 (-) True G8921
TU13373 other upstream 347458 2516779 ~ 2517260 (-) False LOC122358781

Expression Profile