RNA id: TU13263


Basic Information

Item Value
RNA id TU13263
length 472
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G8862
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2229822 ~ 2230293 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttcatgagaAAACGATTTACTGTACATAGATTATGAATGTCCCTATGCTCAAAACGTAGTGAAGAACAAGCGCTGAAAAGGCAATTCTCCCtctatataaaaactatttggcATAGAttccaaaaagtgaaaaatgcatTCTTTATCTAAGACTCaggaatatatattttggtatttcattggtgaaataaaatacaaagcacTTAAAAGTAGAACCTGGAATCATCTCGGAGCGTTTATGTGCTTCTCACCTATCAGGCGGCACTGGTGTGATATCTATACGCGGCGGAGTAATGAAGCCCAGTGACGTTGGTCTGGAAACATGATCTTCTTGAGGACTGCGGGCCCTCTCTGCCTGTCTCCATGACAACGGCGGCAACACAAGGGTTCCTGAGTGGCGTCTGGGGCCTCGCCAGAGATCCACACCCAACGTGGCTCCAGAAGACGTACATGCTGAGAGGTCCTTGCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13260 lncRNA downstream 8984 2219948 ~ 2220838 (-) True G8859
TU13257 lncRNA downstream 13994 2215433 ~ 2215828 (-) True G8856
TU13255 lncRNA downstream 16769 2212772 ~ 2213053 (-) True G8854
TU13248 lncRNA downstream 43726 2185649 ~ 2186096 (-) True G8847
TU13246 lncRNA downstream 45117 2182252 ~ 2184705 (-) True G8846
TU13279 lncRNA upstream 68503 2298796 ~ 2301016 (-) False insl5b
TU13293 lncRNA upstream 95771 2326064 ~ 2525847 (-) True G8885
TU13297 lncRNA upstream 117779 2348072 ~ 2400597 (-) True G8889
TU13355 lncRNA upstream 236594 2466887 ~ 2468236 (-) True G8919
TU13356 lncRNA upstream 236594 2466887 ~ 2468236 (-) False G8919
XM_043257903.1 mRNA downstream 25440 2189510 ~ 2204382 (-) True LOC122358118
XM_043253625.1 mRNA downstream 60501 2158449 ~ 2169321 (-) False LOC122355393
XM_043253616.1 mRNA downstream 60502 2158449 ~ 2169320 (-) True LOC122355393
XM_043253388.1 mRNA downstream 148322 2075896 ~ 2081500 (-) True LOC122355284
XM_043256269.1 mRNA downstream 159295 2056567 ~ 2070527 (-) True LOC122357078
XM_043219833.1 mRNA upstream 68577 2298870 ~ 2301360 (-) True insl5b
XM_043258567.1 mRNA upstream 231016 2461309 ~ 2465921 (-) True LOC122358726
XM_043258655.1 mRNA upstream 281314 2511607 ~ 2517254 (-) True LOC122358781
XM_043258584.1 mRNA upstream 287422 2517715 ~ 2519534 (-) True LOC122358747
XM_043258602.1 mRNA upstream 287422 2517715 ~ 2519099 (-) False LOC122358747
XR_006247870.1 other downstream 844656 1385097 ~ 1385166 (-) True LOC122328981
XR_006247864.1 other downstream 844947 1384697 ~ 1384875 (-) True LOC122328955
XR_006247866.1 other downstream 845547 1384090 ~ 1384275 (-) True LOC122328960
XR_006247871.1 other downstream 846038 1383708 ~ 1383784 (-) True LOC122328985
XR_006246996.1 other downstream 1026835 1179945 ~ 1202987 (-) False dipk2aa
TU13282 other upstream 209068 2439361 ~ 2441713 (-) False G8880
TU13285 other upstream 209831 2440124 ~ 2441713 (-) True G8880
TU13346 other upstream 211891 2442184 ~ 2443319 (-) True G8913
TU13363 other upstream 246420 2476713 ~ 2502739 (-) True G8921
TU13373 other upstream 286486 2516779 ~ 2517260 (-) False LOC122358781

Expression Profile