RNA id: TU92941


Basic Information

Item Value
RNA id TU92941
length 1795
lncRNA type sense_over
GC content 0.38
exon number 3
gene id smim24
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10245196 ~ 10248156 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATATTTACAGACGACTGAGAGGAACGCAGAATTGCGTGCGGACTGTAAATTCATCATGTCTCATCTACAGAATATAGTTGCCTTCATAATAATCTCTGCCTCCATTTGTCAGGCTCAAGCTGGTGGTCAACGGGCATCATCAGATACAGCTAAAGTCACGTTACAGCCGTGGCTGGTGGGACTGACAGCCGTTGTCGTTTTTCTCTTTGTTGTCTTCGTCCTCCTCATCATGCAGAGGCTCTTTTTCAAGAAAGACAAACATGAGCTGGAAGAAAGCCATTCCTTTTACGAAAACAAAGCAGCTGATCTGGAGGCATTCGAGGAGACCAAGCAGACCACTTTCTAATGAGAAGAACAGATGATCACGGTCCTGCAGCACAcaaatctttctctctctggaaATCATGCCACAACTGGCATAGAGTAATTATCATATACAATCTTATGTAATATATCTTTTTAACTTATTGATTTAATTACGTTTTGTCTTCATAAGTGTTGTTCCTCACATCGTCCACTAGATGGAGCAGCACTCACCTAGTCACAGCTGTAACCTTTgcgattgattttttttggcgTATTCTCAATACACGTTTTACTACTTTGCTGTAACTTAggtaacatttaaacattcattagGGTAATGAGAGCATTGGAATTGAAGAGCACACACTCAGGGAGTCACATCATGCACATAATGCTCTGATTAACCGGCTTTTGACTCGTATGACATGGGTTCTGCATGCATATATGCTAAATGGACATGGGTATGAGATCCATTACTCATTTTGACTGGCGGTTTGGACATGTTAAATGCTTCCAGTCAAATGATGTAACGcagttttgcttttgaaacCATTTGCTCGTCTCGGGGGGAATTATATGATGAAAATATCATTCGCAGAAAAAATGGCCAGGTGTTCAAATGTGTTAATGATGGAGACCATTACGGTTTAAAGTATACAGCGTTAAAGTTAAAGTAGACTTTGGTCTGGTGTTGCCTAAATGATTACTAAGACTGTTGAGCGGTTAGTTATGATGTAATAAACTGCCTAACGCATGCTTTTTATATTGATGTGGTTCCTCCCTTCGTGATTAAATAAAAGCTCATCTTTGGGTTAAATGGGAACGCTTCCAGTTTTATACTCTTATTGTAAACTTAAGAGCTGCTggtatttcataacattttaattaacgtTTAACTGCGAGTAGATAGCTGATACTGTTGCCTTGGCTGTGCTTCTCAAGGTTTCCCATACATGGGAAACAGTTTAGCTGAAACAGTGCTGATGAGTGACAGTAACTAAGCCTACAGTCAGCAGCAATAAGTGAAGCATGAAaccagagcgagagagagagagagacttcacTTCTGTCTCATTCACCACTGCTTCCttgaaatttttatttggttgtttttattcTGGTTCCTGAGCGACGTCATCTTTGCTTCACGCATCACTTTCTCTACTAATGCTCATTACTGCGAAGTTAAACGACAAAACCTCAGATAAAAACATTCTGAAgtcaaagagaaagagatactgataaaaaaaaaaaaatccatcggCTGAGCTCTGCAGATCTGATTTCAATCTGTTACTTTTTCTTGAATCAGTGAATCTATTTCAGTAAATGCTACCTATTGAATGTCTTTTATTCtcaccatttattttttcaaatacagtaaaagagcaaaattttgaaatattagtacgcattattttttttgtgtctttgtaaTGTATTCGTATGATGGCAAAGATGGATTTTCAGCagacattactccagtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92937 lncRNA downstream 88003 10156975 ~ 10157193 (-) True G62789
TU92936 lncRNA downstream 92291 10152239 ~ 10152905 (-) True G62788
XR_006251619.1 lncRNA downstream 94205 10127885 ~ 10150991 (-) False LOC122350767
XR_006251618.1 lncRNA downstream 94205 10127885 ~ 10150991 (-) True LOC122350767
TU92907 lncRNA downstream 106316 10134732 ~ 10138880 (-) False LOC122350767
TU92943 lncRNA upstream 2512 10250633 ~ 10253256 (-) True G62795
TU92944 lncRNA upstream 2512 10250633 ~ 10252235 (-) False G62795
TU92949 lncRNA upstream 15697 10263818 ~ 10264761 (-) True G62800
TU92955 lncRNA upstream 53541 10301662 ~ 10301885 (-) True G62805
TU92967 lncRNA upstream 77620 10325741 ~ 10327208 (-) True G62817
XM_043247916.1 mRNA downstream 203427 9995547 ~ 10041769 (-) True adamts10
XM_043247917.1 mRNA downstream 215606 9995547 ~ 10029590 (-) False adamts10
XM_043247334.1 mRNA downstream 250088 9979636 ~ 9995108 (-) True myo1f
XM_043247333.1 mRNA downstream 250298 9979636 ~ 9994898 (-) False myo1f
XM_043247335.1 mRNA downstream 256542 9979636 ~ 9988654 (-) False myo1f
XM_043245989.1 mRNA upstream 5769 10253890 ~ 10256950 (-) True dohh
XM_043246080.1 mRNA upstream 9024 10257145 ~ 10259192 (-) True LOC122349939
XM_043247660.1 mRNA upstream 16720 10264841 ~ 10271997 (-) True haus5
XM_043246948.1 mRNA upstream 32182 10280303 ~ 10284362 (-) False si:dkeyp-82a1.6
XM_043246947.1 mRNA upstream 32182 10280303 ~ 10284362 (-) True si:dkeyp-82a1.6
TU92747 other downstream 275711 9961797 ~ 9969485 (-) False mllt1a
TU92748 other downstream 283495 9954750 ~ 9961701 (-) False mllt1a
XR_006251623.1 other downstream 982370 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1587910 8652426 ~ 8657286 (-) False pola2
TU92043 other downstream 1595231 8647281 ~ 8649965 (-) True mrps36
TU92903 other upstream 141062 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 192643 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 292098 10540219 ~ 10540291 (-) True trnar-ccg_26
TU93206 other upstream 739325 10987446 ~ 10990704 (-) False cep104
TU93213 other upstream 848881 11097002 ~ 11131207 (-) False LOC122349915

Expression Profile