RNA id: XM_043246052.1


Basic Information

Item Value
RNA id XM_043246052.1
length 1523
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC122349915
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11096140 ~ 11131238 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATTACTAGCTGAGCCGTTTTTTCATTACATGTAATATGATTGTGAAAATAACAGCGTGATGAGCGTTTGTCAAAAATGACAGAAGTAGTTattctgtaaaattagcccaacTTACACGCGACATGCGTTAGcagcagaaaagaaagagagttgTGTCCTGCAGAGACTGAAATTAATGAGCAGCCTAAAAAGTCTCTGGGTGATTTAGCGTCGCATTTAGTCAATATTCCgcgtttttaattaaataacaagcGCTTAACTTCGCCTGCGGGGATGATTTAACAACCTGCGAAACCTTTAGGCGTTTTCAGGAATGTTTGCCAGGGGACATTAACGCTTACTGACCGACTGACCCCTTTATAGAAACGTTCCGCGGTCGGTTGATAATTCTAAAGAAACCCGCACATGTCTGACTGGAAAAGCGCTTTCTTGAGGAACCGCGTGATCCCGCCTCACAGCCAAACAGCCAGACAAGCTCCAGGATCTTCTCAAGGTCTTCAGCTGCTCTTCAAACAGATAGATGGACTTCACCTAAAacagTCAGAGTCATCGCCATCACTCCAGTATCAGCTGCGTGTGACCCTGTTTGACTCGGGTCACCAGCACTTCTTCGGGCGCACATGGAAGAGCGGCTCACACTCTGTCAGTGGCGTACAGGGTCAGAGCGGTCGGGTGCTCTTCAATGAGGTTGCATACTTCCACACTTCCTTGTGTTTGAGTTCTGTGGTGGCAGTGGTGGAGTTGGTTACTCTGTCTACCAGGGCAGACAGTTCCCAGGATGCACTGGGGTCGGGGTTTGGACTGCTTCAGCTCTTCACAGGTCGCGCAGACACCGGCATCTCTCAGGGGGAGGGCAGGTTAACTCTCTTCAGTGGGACCCCTAGAGCCCTCTTTCACCCGATGCTGAAAGACCCTTTACAGTTGAATGCTGTATTATCAGTGATGGAGGGCTGTCAGCTGCTTTACTCCATACAGCCACACCCAGCTCTCACTCCCATCATGCACCTGCTCCCGCCCAACATTTTGGTGTCTGGACATGACAGCGTCCCCGGTGTGCTGTCATCTGCGGACACAGGCACAGATGTGCTGCGGAAGCCTCGTCTGTTGAAGAGCTTCTCGTGTGTGTTGGAGGGACTACGTGTGGCACTCTTCCCCTCCGTGGAGGTCTTCGAATCTGACCTGCTCCAGCTGCTCAACAGAGACTGCCAGAATACATCTTCCCTTGTTGGTGTTGCTGAGGATTACGTCATCACATAATTTATCATATGTATGATAATCCCCCAGTCATAGCTCTCCAGAGACATTGATCAAGATACTAGCCCTATCTGTTATCGACTTATGCTTTTCCAAACACGAGGGAGGAGGGCGCACTGAGCTCGAAATGGACAATCAAtatcattttttcataaatgatataaagacaattattattatttttcctttttactgtCTTTTAGAGGCATCAAATAAAATCTTGGGAAGGGAGAGATCAAACAGATCTCAAATAAcagactttcaaaa

Function

GO:

id name namespace
GO:0072114 pronephros morphogenesis biological_process
GO:0035844 cloaca development biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:2000096 positive regulation of Wnt signaling pathway, planar cell polarity pathway biological_process
GO:0060028 convergent extension involved in axis elongation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251671.1 lncRNA downstream 271089 10819217 ~ 10825051 (-) True LOC122351000
XR_006251661.1 lncRNA downstream 296177 10755389 ~ 10799963 (-) True LOC122350960
TU93075 lncRNA downstream 339228 10756533 ~ 10756912 (-) False LOC122350960
TU93074 lncRNA downstream 340134 10755654 ~ 10756006 (-) False LOC122350960
TU93067 lncRNA downstream 398015 10696335 ~ 10698125 (-) True G62861
TU93215 lncRNA upstream 432 11131670 ~ 11169473 (-) True smim1
TU93235 lncRNA upstream 65915 11197153 ~ 11205373 (-) True G62974
TU93238 lncRNA upstream 70457 11201695 ~ 11210161 (-) True G62977
TU93256 lncRNA upstream 145121 11276359 ~ 11276914 (-) True G62992
TU93312 lncRNA upstream 275716 11406954 ~ 11441818 (-) False G63014
XM_043246050.1 mRNA downstream 105405 10973305 ~ 10990735 (-) True cep104
XM_043246750.1 mRNA downstream 128053 10964582 ~ 10968087 (-) True c8h1orf174
XM_043246747.1 mRNA downstream 134150 10826429 ~ 10961990 (-) True LOC122350349
XM_043246124.1 mRNA downstream 562802 10529443 ~ 10533338 (-) False LOC122349966
XM_043246122.1 mRNA downstream 562802 10529443 ~ 10533338 (-) True LOC122349966
XM_043246054.1 mRNA upstream 3465 11134703 ~ 11137541 (-) True LOC122349916
XM_043246055.1 mRNA upstream 9945 11141183 ~ 11159286 (-) True LOC122349917
XM_043247640.1 mRNA upstream 36843 11168081 ~ 11169099 (-) False smim1
XM_043247639.1 mRNA upstream 36846 11168084 ~ 11169255 (-) False smim1
XM_043246930.1 mRNA upstream 91802 11223040 ~ 11228121 (-) True lrif1
TU93206 other downstream 105436 10987446 ~ 10990704 (-) False cep104
unassigned_transcript_1293 other downstream 555849 10540219 ~ 10540291 (-) True trnar-ccg_26
TU92984 other downstream 617455 10440764 ~ 10478685 (-) False G62826
TU92903 other downstream 704097 10389183 ~ 10392043 (-) True G62760
TU92747 other downstream 1126655 9961797 ~ 9969485 (-) False mllt1a
TU93259 other upstream 192666 11323904 ~ 11345858 (-) False LOC122350269
TU93421 other upstream 431040 11562278 ~ 11564405 (-) False G63095
TU93424 other upstream 431040 11562278 ~ 11564405 (-) False G63095
TU93426 other upstream 431040 11562278 ~ 11564405 (-) False G63095
TU93692 other upstream 647033 11778271 ~ 11779251 (-) True G63274

Expression Profile