RNA id: XM_043246122.1


Basic Information

Item Value
RNA id XM_043246122.1
length 1495
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC122349966
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10529443 ~ 10533338 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATTAAGGTCAAAGTGCACCGGAGAAGTACTTTTTCGGGCAAGTTTTTTCCTAAAGCAATCATTCATTTCTAAAGACGAATTGAGAGTGAATTTGCTTGTATATAAACACGATGAAGCCTGTGCTTATGGCTGTTCTGGTTGTTGGAGcCTACGGTTGTGGGCTTCCCACCTACCCTCCTGTCCTATCAAAGGTCTATGGGGGTGTAGATGCACTTCCACACAGCTGGCCCTGGCAGATCTCCCTCCAGTACATGCACAGTGGAAGCTGGTACCACATGTGTGGTGGCACCCTCATTTCCGATGAGTGGGTTTTGATTGCTGCTCACTGTATTAGCAGTTCCAGGAGTTACAGAGTGTATCTGGGAAAACATAACCTGTATATGCTAGAGAGTGGATCTATCGCCATCTCCCCTAGCAAGATAATTATCCATCCCGCATGGAATTCTAACTCTATACGTGATGACATCGCCCTGATCAAACTGCAGACTCCTGTGACCCTAAGTGGCACTATCAGCCCCGCATGTCTTCCACCGGATGGGTATATTCTGCCCCACAATGCCCCCTGCTATGTCACTGGTTGGGGATCTTTCTACATCAATGGACCCCCTCACGATATCCTGCAGCAGGCTCTGCTTCCTGTGGTGGATCACGCCACCTGCTCTAGGTCTGACTGGTGGGGCTCGAAGGTCACACAAAACATGGTCTGCGCTGGTGGAGATGGTGTTGTTGCTGGATGTACTGGTGACACTGGTGGCCCCCTAAATTGCGCAGGTAGCAGTGGTACTTGGGAAGTCCATGGTGTTTTAACCTATCAAAGTTCAATGAGCTGCCTGATAGGCAAGAAGCCCAACATTTTCACTCGTGTGAGCGCCTACATTGACTGGATCAGCAAGAGCATTGCCGGTTATTAAAATGCAAGCAGAAACGGGAGTTttctgtcatccatgtcttaCACAATAAAAACCAGTGCTGGGGTTCATTTGACCTacattccctttttttttagaCTGCTCAAAATATTGgttaaactgtacattttttttacgaAGATATTTCATATTAAGGGTCATGAATGTTCATGGAAAGTTTTAacacataaatgtgttttagaaaGGCTATACAAAAATTGTTACAACTTTTATCGGAATTGGTTTTCATgcaatttgccaaaaaaaaagcttgtcaaATGCTAAAATATGAAACACATAAGAATTTCAAGACTTGTTTtaacttcactttttttctacttttacagttctaaaaacacttttacaaaaatctaagtttatgtgtgtgtctgtgcaactaattttgaaaataaatatgtgagaCCAAATTGATCCACAACTCCACAGAATACATAACATAATTTACAAGCTACAATAGAGTTTTTGTGTTCTAACAtgaattttttgtatttttcacaaaCTGAGTAGAAACCAGGTCAGTTTGGCCCCCAGCAGAgaagtattataaataaatggttCAAATGCA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93028 lncRNA downstream 6956 10520659 ~ 10522487 (-) True G62835
TU93006 lncRNA downstream 44844 10445129 ~ 10484599 (-) False G62829
TU93014 lncRNA downstream 44844 10445129 ~ 10484599 (-) False G62829
TU92986 lncRNA downstream 49392 10440764 ~ 10480051 (-) True G62826
TU93021 lncRNA downstream 95327 10431781 ~ 10434116 (-) True G62831
TU93067 lncRNA upstream 162997 10696335 ~ 10698125 (-) True G62861
XR_006251661.1 lncRNA upstream 222051 10755389 ~ 10799963 (-) True LOC122350960
TU93074 lncRNA upstream 222316 10755654 ~ 10756006 (-) False LOC122350960
TU93075 lncRNA upstream 223195 10756533 ~ 10756912 (-) False LOC122350960
XR_006251671.1 lncRNA upstream 285879 10819217 ~ 10825051 (-) True LOC122351000
XM_043246120.1 mRNA downstream 726 10526347 ~ 10528717 (-) True LOC122349964
XM_043246165.1 mRNA downstream 38243 10487790 ~ 10491200 (-) True LOC122349990
XM_043247531.1 mRNA downstream 190774 10329776 ~ 10338669 (-) False gls2a
XM_043247530.1 mRNA downstream 190774 10329776 ~ 10338669 (-) True gls2a
XM_043247453.1 mRNA downstream 209072 10316425 ~ 10320371 (-) False cpt2
XM_043246747.1 mRNA upstream 293091 10826429 ~ 10961990 (-) True LOC122350349
XM_043246750.1 mRNA upstream 431244 10964582 ~ 10968087 (-) True c8h1orf174
XM_043246050.1 mRNA upstream 439967 10973305 ~ 10990735 (-) True cep104
XM_043246052.1 mRNA upstream 562802 11096140 ~ 11131238 (-) False LOC122349915
XM_043246051.1 mRNA upstream 562802 11096140 ~ 11131238 (-) True LOC122349915
TU92984 other downstream 50758 10440764 ~ 10478685 (-) False G62826
TU92903 other downstream 137400 10389183 ~ 10392043 (-) True G62760
TU92747 other downstream 559958 9961797 ~ 9969485 (-) False mllt1a
TU92748 other downstream 567742 9954750 ~ 9961701 (-) False mllt1a
XR_006251623.1 other downstream 1266617 9257952 ~ 9262826 (-) False mindy4
unassigned_transcript_1293 other upstream 6881 10540219 ~ 10540291 (-) True trnar-ccg_26
TU93206 other upstream 454108 10987446 ~ 10990704 (-) False cep104
TU93213 other upstream 563664 11097002 ~ 11131207 (-) False LOC122349915
TU93259 other upstream 790566 11323904 ~ 11345858 (-) False LOC122350269
TU93421 other upstream 1028940 11562278 ~ 11564405 (-) False G63095

Expression Profile