RNA id: TU93808


Basic Information

Item Value
RNA id TU93808
length 1400
lncRNA type sense_over
GC content 0.35
exon number 1
gene id prok1
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12051357 ~ 12054530 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaacaataactgGAGGATTTACTGAAAGATTTTATAGCAATTTGAGCTCTAGTGATTCCCAACCAGGGGTACTTGgacagatttagattttttaaaccTATAACACAGgaataaagttattttcaggaaataaaacaaaaattaataaccaaaatattgttttgtgtgtCCTTATAAATTAGTGTGGACACTCATACCAGAATAtatgtaaaccttttttttttttaccactaaTATATCAGCggtaattttattaaattagaaaatgacTTCTTCTTtgaaatcatattaaatataaaatgagcTGACAATATGAGCGCATTTCAGTAAAGGGGTGCTTGAGGggggcataaaaaaaaaaagactggcaAATAATGCTCTTCTAAATTTAACTCAGCTGATGTAAAATCACACAAACCCCATGAAAAATGTACTACTCTAGCTGGTGTCATTAGGAAGGATTAGCTTGAAGTGAAACGTCCAGTGAGGTCTCTTCTCCATCATCCGGTCCAGCGTCATACAGAAAGAGATGACGAAGTCCCTGCGGAGGTGTGGGTGGGGGGGAGAGAGGGGCGAggggagataaagagaaagagagatggagaaagaaagagagagacagagtcaGACCTCAGACCTCATTTAAGAAGTTACCAAAGACTCCACACTCTGAGACAGGAGGAAAGGGACAGCCGAGAAAGTGAAGTCATCTCAGGGTCATACTAAATCCTCCAGGAGCTCCACGGCACAGAAGAGAGATAAAagggagaataaaaaaaacacataaaagacCGCTTAAGCTCTTAGTGTCTGTGCCCCGCTGCTGCTATGAGCAGGGTGTTGATTCTGTCCGTGCTCCTGCTGTCCCTGAGCTGGTGCAGATGTGCCGTCATCACAGGGGTAAGTCCGACAAATCATCTGCTTTTATTCAACgtaattctattatttaatCACGCTTTAATTGAATcgatcatttatttatgcaattatacaTAAGCTGGCTCGGTTGGCTTGAAATTTCAATAATTAATGGTGAAAAAAGTTAATTGTAGGTGTGCTTATGtcccaaaatgtatttatttaatttgtgatttgCCTTAATTTTGCTTGTTGggattaattgtttaaaaagcgTGTTTGCTATGTGTaaattgtattacatttaaaaaaataaatacaaatttgttaattaattaaattaataatataataaatcttTTACAATcaaattgcaaacattttttgaacgtttttccacatttttctaTATAATGCCTAACtgatatttttctgtattttatcatttttttcccccaaacttTTCttgctcaatatttttttgcCCCAATTAACATCCTccatattgtattgcattgtcATTTCacgtaaaatattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93778 lncRNA downstream 152 12051357 ~ 12052979 (-) True prok1
TU93798 lncRNA downstream 30378 12022515 ~ 12022753 (-) True G63350
TU93795 lncRNA downstream 33178 12019711 ~ 12019953 (-) True G63347
TU93792 lncRNA downstream 35780 12016726 ~ 12017351 (-) True G63344
TU93738 lncRNA downstream 197069 11855745 ~ 11856062 (-) True G63304
TU93769 lncRNA upstream 50048 12104578 ~ 12139398 (-) True G63321
TU93764 lncRNA upstream 76961 12131491 ~ 12134728 (-) True G63316
TU93777 lncRNA upstream 104659 12159189 ~ 12198367 (-) True G63329
TU93864 lncRNA upstream 248198 12302728 ~ 12304329 (-) True G63395
TU93874 lncRNA upstream 277926 12332456 ~ 12334605 (-) True G63404
XM_043246544.1 mRNA downstream 39981 12010488 ~ 12013150 (-) True zgc:110353
XM_043246540.1 mRNA downstream 69822 11977200 ~ 11983309 (-) True adora1b
XM_043246465.1 mRNA downstream 78302 11970741 ~ 11974829 (-) True dclre1b
XM_043246571.1 mRNA downstream 161848 11883738 ~ 11891283 (-) False lhfpl5b
XM_043246423.1 mRNA upstream 23709 12078239 ~ 12083038 (-) True rbm15
XM_043246535.1 mRNA upstream 31389 12085919 ~ 12091662 (-) True alx3
XM_043246457.1 mRNA upstream 95457 12149987 ~ 12168140 (-) True kcnc4
XM_043246451.1 mRNA upstream 114357 12168887 ~ 12171370 (-) True hspa1b
XM_043246467.1 mRNA upstream 117659 12172189 ~ 12189485 (-) True ahcyl1
unassigned_transcript_1295 other downstream 255929 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 273880 11778271 ~ 11779251 (-) True G63274
TU93421 other downstream 488726 11562278 ~ 11564405 (-) False G63095
TU93842 other upstream 209164 12263694 ~ 12264533 (-) True G63385
XR_006251575.1 other upstream 296716 12351246 ~ 12363095 (-) False kcnq2a
TU94636 other upstream 1754898 13809428 ~ 13863250 (-) True G63933
XR_006251614.1 other upstream 2669678 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 2725001 14779531 ~ 14781710 (-) True G64228

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069977 False 699 processed_transcript 0.42 5 NC_007119.7 24730120 ~ 24743864 (+)