RNA id: XM_043247813.1


Basic Information

Item Value
RNA id XM_043247813.1
length 2366
RNA type mRNA
GC content 0.43
exon number 10
gene id kcnip3a
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 17601258 ~ 17645511 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCACATTCCACTTGACAGATCTGCGCGGTGAAGCTGCTGCTCCTGTAGTGAGTGGAAGAAACGCATATTCTCCTCAGCGCTCGAGGAGGATTCATCACGAGAGCACAATGCAGGAGGATGGCAAGGTGGTGGATGGCAGTCTTCTGGGTGATGCCAATGGGGTGGAGCCTGGCACGGGTCGACAGAAAGAGAGCGGCAAATGGCAGAGGCCTCGATTCACGCGGAAAGCCCTCATGAGGTGCTGCCTGGTCAAATGGATCATCGCCAGCACCGGACCCAAAGAGCAAGACGACAGCAGTGACAGTGACCTGGAGCTGTCCACGGTGCGACATCAACCCGAGGGTCTGGAGCAGCTGCAGGCTCAGACCAAATTCACCAAGAAGGAGCTGCAGTCCCTTTACAGGGGCTTCAAAAACGAGTGCCCAAGTGGTTTGGTTGATGAGGAAACTTTCAAGACCATCTACTCTCAGTTCTTTCCCCAAGGggATGCCACCACATACGCCCACTTCTTGTTTAACGCGTTCGATCTTGATAGAAATGGCTCGATTCGTTTTGAGGACTTTGTGATCGGTCTTTCTGTGTTGCTGAGAGGATCCGTCACTGAGAAGCTCAACTGGGCTTTCAACCTTTACGACATCAACAAGGATGGATACATCACTAAAGAGgagatgCTGTTAATCATGAAGTCAATCTACGACATGATGGGCAGGTACACCTACCCCAGTGTGCGAGATGAAGCTCCATCTGAACATGTGGAAAAGTTCTTCCAGAAAATGGACAGAAATCGGGATGGTGTGGTCACTATTGAGGAGTTTATTGAGACCTGTCAGAAAGACGAAAACATCATGAACTCCATGCAGCTCTTTGAAAATGTGATTTAGGACGGGAGGGGAGCAATCTAGAGCTAAAGCAGCCCTCAGTGTCCCAATCCAGTTCTCTCCACATGTCTATATACCAAACTAGCACAGCAGTCACTCTCTGTCTTGTCCTGTAGCACTACTCCCATGCCTGCTGCACTCCGTAGAATCGTACTATAGACCAACACATAGCCTACAGTATGGCATCACAGTTTGTACTTCACAGCAGGactacttttaaaaaagaaaagcctgGACGGCTGGGATCCTTCCAGTTGCTAAATGCCGGCTACCGTATGGTGGAACTTTCTGATCCGAATGAAGTAGCAAAGCCACGTTTTGTATCACTGGTCGATGGATTCCAGTGGGCTCTCTGACGTCCATATAAAAACCATCACCGCTCTGGACTGCTTTCTTCTGCCTTACGAATGCGGGACATTACAAGACTCAGTCTCAACCTTCCAGATACCGTAGTTTGAAGGAGAGTACAGTAACTATGGATTTCAAGGGACCCAAAGGAGCATCTAGCACCAATGATGATTTGAAGCACATAATACTCaccaaaagaacaaaattaatGTGATGAAAACCGACCTGAAGCATGCCTGTCCAAATATGTGAgatatttgtgattttctttgcATGGAGACTGACAAAGTTGTACATTTTCTTCCTTGTAAGCCAGTAGGTCCCACAGAAGACTGTAAGCAAACTAAAGCAACTGTATGCGTGAAGTTATAGTGTACCAGTGTTTATAAGTTCTGCTCAAATCTGTATTGCACATATCAGTGGGGCCAGGATGATTTGTTTGGTCACATTTGATTCTTGCACAGCAATGGGGAGtattaaaagttatatttacAGTGTAGGCATTTTAGAGGTATAGAAGTacgtgttttattttcaggaatgtatttatttgtcagGCAGCGTCTGATGGAATGCAGGGTTCGGGCATGAACGGACATGTCCTGGTTATTAAAATTGTGGTTtacaagttttattattatgctcattttaaaaatttggattttgctatacatatatatatatatatatatatataaatatatatttgaaacagACTGAGATATATACTTTACGAGAGGCttctttatcttatttttttgcttttgcccACATGATTTGTAAaggttaattattattttattaagtacagCACACAGTGGGCAACCTTGAGAATCTCTTTGTTATATGACAGTCGTATTATCAGTGATATGGATAGCTTTTGCTCTTACGCAAACTAAAAGTCCCCTTTTGTTTGGGGATGGTGGGAAACTATTGCTCATCTATAAAGGAACTACTATAATACTATGATGAAGGTGAAGTTAAAGATTCAAAGCTATTTAAAAGTCTGTTTTCAGTTCACTTTCAGTAGCAACACCTAAATTACCTAAAagctcttatttatttattctttgtttatttggttgGAGCAGATACAATGTAGATCTAATGAATAAAAGATGCACTACTCTTGATCAAAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95730 lncRNA downstream 188386 17411009 ~ 17412872 (-) True G64724
XR_006251569.1 lncRNA downstream 235754 17362169 ~ 17365504 (-) False LOC122350118
XR_006251626.1 lncRNA upstream 12298 17657809 ~ 17660978 (-) False LOC122350842
TU95783 lncRNA upstream 13063 17658574 ~ 17660966 (-) True LOC122350842
XR_006251627.1 lncRNA upstream 13645 17659156 ~ 17660978 (-) False LOC122350842
TU95788 lncRNA upstream 15838 17661349 ~ 17665132 (-) False G64757
TU95787 lncRNA upstream 18194 17663705 ~ 17665132 (-) True G64757
XM_043246760.1 mRNA downstream 3411 17569420 ~ 17597847 (-) False slc23a2
XM_043246759.1 mRNA downstream 3411 17569420 ~ 17597847 (-) True slc23a2
XM_043247723.1 mRNA downstream 33649 17552520 ~ 17567609 (-) True rassf2a
XM_043247724.1 mRNA downstream 38137 17552520 ~ 17563121 (-) False rassf2a
XM_043246070.1 mRNA downstream 58180 17540826 ~ 17543078 (-) True prnpa
XM_043247691.1 mRNA upstream 51664 17697175 ~ 17699415 (-) True crybb2
XM_043246232.1 mRNA upstream 56001 17701512 ~ 17706491 (-) True LOC122350049
XM_043246062.1 mRNA upstream 407848 18053359 ~ 18056277 (-) True si:dkey-63d15.12
XM_043246661.1 mRNA upstream 430086 18075597 ~ 18079483 (-) True asgrl1
XM_043246666.1 mRNA upstream 434434 18079945 ~ 18082578 (-) False si:ch211-170d8.8
TU95705 other downstream 200030 17325044 ~ 17401228 (-) False LOC122350953
XR_006251564.1 other downstream 239408 17359385 ~ 17361850 (-) False zgc:194007
XR_006251566.1 other downstream 239408 17359385 ~ 17361850 (-) False zgc:194007
XR_006251565.1 other downstream 239408 17359385 ~ 17361850 (-) True zgc:194007
TU95703 other downstream 257519 17323060 ~ 17343739 (-) False LOC122350953
XR_006251590.1 other upstream 461942 18107453 ~ 18112701 (-) False LOC122350290
TU96073 other upstream 509624 18155135 ~ 18157543 (-) True G64967
TU96164 other upstream 914156 18559667 ~ 18560334 (-) True G65033
TU96415 other upstream 1385476 19030987 ~ 19039551 (-) False LOC122350102
XR_006251696.1 other upstream 1556766 19202277 ~ 19202377 (-) True LOC122351133

Expression Profile