RNA id: XM_043247014.1


Basic Information

Item Value
RNA id XM_043247014.1
length 2464
RNA type mRNA
GC content 0.45
exon number 15
gene id acot11b
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9009726 ~ 9018000 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGACGAGCGCAGTGTGTGGACACTTTCTTTGACTGGGAATatgaagtttattttattttgcaaagttTCAGGCGTCACGGagactttgtttctttcttcgtGCAAATGAGAGTGGTTTGACATCCGTTCATCTGAGAGACATGCTGGCTGCTCCTGCATCACAGCCTCAGTGGATGACATTCACTTTGAAACCACCATAGGGGTTGGACAGGTTGTAAACATTACTGCTAAAGTCAACAGAGCCTTCACGTCTAGCATGGAGGTTTGAGGGAACGTCTACTACTGTTTAGCAAAATGCAGAAATTAGTTGGGATTTTGGTGAGCTGTGAAGACCTCTTCAGCGACAGACAGTGGAAAGTCTGTCACGCTTTCGCCACCTTTGTGGCCCGACGTACCGAAGCAGGAAAGGTACAGCTGAAGCAGGTGATTCCACGCACGCAGACGGAGCAGATGGAGTACAGCCTCGCAGCCGAGCGCAGGAGGATGAGACTGATCCATGCAGAGATAATTAACGATCTTCTCAGCAGCTGCTCCTCTCAGACAGTGAGCGAGCGTCTAGATTACCAGGATGCGGTGCCTGCGGATCGGACTCGGGTAGAAAGCGTCGAGCTGGTTCTCCCGCCCCATGCCAATCACCAGGTCAGCACGTTTGGTGGACAAATCATGGCCTGGATGGAGAACGTAGCCACCATCTCTGCCAGTCGCTTGTGTAATGCTCACCCGACTCTGCGGAGTATAGACATGTTCCACTTTCGTGGGCCGTCCCACATTGGAGACAGACTGGTGTTGAAGGCAATTGTAAACAATGCTTTCAAGAAAAGTATGGAGGTGGGAGTGTGTGCGGAGGCCTATCAGGGTGGAGAGCCCCTGCGACACATCAACACCGCCTTCATGACCTTTGAGGTCTTGGACAATGACAGGAAGCCATGCACGTTGCCAAGGATACGGCCTGAGCCTGTGGATGGTAAAAGACGCTTTCAGGAAGCCATAGCTAGAAAGAAAATCCGTCTTGACAGGAAGTACATAATATCCTGCAAACAAAGTGAGGTTCCTCTCTCGGTTCCCTGGGACCCAAGTAACCAGATGTACCTCAGTTACAATAATGTTTCTGCACTGAAGATGTTGGCTGCCCGGACTAACTGGGTTTTAACTTCAGAGAAAAACAAGGTGAGTTTATACACACTGGAGGAAAACCAGATGTTGTGCTTTAAGGTGGAGACTCATGTGGCTGTGGCGGCCAAGCAAGTGTTTCTGTTACTTTCTGATCTAAGGCGAAGAAAGGCATGGGACCACCACTATCAAGAGTGTGAAGTGATAACTGACTCACATGAAGACGACACCATCTACCGAGTTGTCACCCCCTCTGTGACTAAAGGAGGCAAAGTCCAGGACTTCATCCTCCTGGCCTCCAGGAGGAGCCCTTGTGATTCTGGAGACCCTTATTTGATTGCCTTGCGTTCTGTGACCCTGCCTGCGTACCCTCCCACTGAAGACTACAACAGAGGAGAGGTGCTGTGTGCTGGGTTTAGTATCTGGGAAGAGGACAACTCTTTCACTAAGATTTCGTACTACAACCAGGCCACTCCTGGAGTGCTGCCTTATATCTCCACTGACATCGCTGGGCTTTCCTCCAGTTTCTACTGCACCTTTGCCTCATGTAGCGCTTTCCTGGAGGAGAATAAAGACAGCCTGGCTTCCCTGCCCACATCCACCCTGTGAGAAAGCTGAATTCGACAGTCTACAGTCTATTTCGCTTTTAAACAAATGGTTATGGTCAAGATATATATGGGTGACGTTCACATTTGAGTTAAGGATAAAAGATCATGAATTTTAGGTACATAGAattcttattttatatgttaGTAGTACTTATTTACTTATGTTACTAGAATGGGACCCTATAATACAAAAGCTGAAAGGTACAtctctgtaaaatattttcttctaaatGCTACCTATTAGTAACTTAGGGTACCGCCCCTCTGGcatttttgcacctttttgGGTTTAGAAAAAGGCATTAGCATtgttattagtctttttttgttgtttaaactCCACATACGTACTATATCAGTATATACagaattattttgtaatgtaattttattattttaaaaagataataattcttctaattttttaaatatttgaccttttaaattagaatttagGGTCTCTCTACAAATGCCACTTCCAGAACACTAAGCTAGTATACTGCCTTGTTGTCATTCCCAATGACGCAGAgtactcaaaataaaatgaataaacaccaAATAGGTGGCAAGGTCGATATGTGGTACTTCCTGGAACATGCGCAATCACGTTTGCATAGATTTCCACTCTAGTTAGTGATGGATATTAGAGTTTACCTTTTCATGTCAGGCCAGAACGGTGCCTTGATTTTCACAATGCTGATTCACTGCACAGGacctgtttaaataaatctgttacACGTAGAAA

Function

GO:

id name namespace
GO:0008289 lipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92223 lncRNA downstream 2621 9006834 ~ 9007105 (-) True G62263
TU92222 lncRNA downstream 2947 9006555 ~ 9006779 (-) True G62262
TU92212 lncRNA downstream 36953 8968289 ~ 8972773 (-) True G62255
XR_006251681.1 lncRNA downstream 67471 8938318 ~ 8942255 (-) True LOC122351086
TU92194 lncRNA downstream 67525 8936078 ~ 8942201 (-) False LOC122351086
TU92203 lncRNA upstream 12871 9030865 ~ 9038700 (-) True G62250
TU92206 lncRNA upstream 12871 9030865 ~ 9038464 (-) False G62250
TU92265 lncRNA upstream 64801 9082795 ~ 9085194 (-) True G62293
TU92550 lncRNA upstream 390420 9408414 ~ 9414439 (-) True G62519
TU92551 lncRNA upstream 390420 9408414 ~ 9414439 (-) False G62519
XM_043247015.1 mRNA downstream 3723 9002221 ~ 9006003 (-) True fpgt
XM_043247006.1 mRNA downstream 7764 8991343 ~ 9001962 (-) True tnni3k
XM_043247484.1 mRNA downstream 33786 8972793 ~ 8975940 (-) True LOC122350776
XM_043246900.1 mRNA downstream 74982 8922693 ~ 8934744 (-) True st6galnac5b
XM_043247367.1 mRNA upstream 92397 9110391 ~ 9113350 (-) True rps8b
XM_043247906.1 mRNA upstream 95493 9113487 ~ 9116378 (-) False elovl8b
XM_043247905.1 mRNA upstream 95495 9113489 ~ 9116378 (-) True elovl8b
XM_043247903.1 mRNA upstream 98626 9116620 ~ 9121780 (-) True mutyh
XM_043247904.1 mRNA upstream 98655 9116649 ~ 9121776 (-) False mutyh
XR_006251592.1 other downstream 352440 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 359761 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 359761 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 579952 8429694 ~ 8429774 (-) True LOC122351130
XR_006251694.1 other downstream 580182 8429474 ~ 8429544 (-) True LOC122351131
XR_006251623.1 other upstream 239958 9257952 ~ 9262826 (-) False mindy4
TU92748 other upstream 936756 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 943803 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 1371189 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 1422770 10440764 ~ 10478685 (-) False G62826

Expression Profile