RNA id: XM_043247772.1


Basic Information

Item Value
RNA id XM_043247772.1
length 4180
RNA type mRNA
GC content 0.43
exon number 9
gene id pbx3b
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 15833965 ~ 15948783 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAGGCGACCGTACTACGGTGTAAGGAAGCGAGGGGGCCCGTGCAATTCATTATTAGTTTGAATCAGACAATATAAAACTCCgaccttttgtttgttttattgggAATGGTTATAATGTAACGGCATCTCAATGCACTGGCGCGCTTTTAAATGAGGCACGCGTAAAGTGGAGACTTAAACGCTGTTGATTTGATGTTCTGGTCTCATCATTATCATCACCAGCAGTATCATTAGTAGCTAACTGGCATTTTGTTTTCGGGGGCTTCGGCGAGAAGTGACAAGAATCTAAGACCCCTCCTCTGCAGGGCGGAGCGTGCATTTTGATGTCgattttgtatctttttttcttctctgacaCGTCCGCACTGAGTGAATGGCATTGGCACATTGTCAATCGCTCACTACCGCTGCCATCAAACAACATAAAGCACACACAGCCCGCGCGCTCGACTCATAAATTTCCGCCAGCAGATATTTTTGCGCATCGCTTTATGGCGCGTGATTAATTTTTTCGCCAGTTTTTCTATTTTCCCTACTGAAAGtgagaaaactttttttatacgtttttatatttttcctacAATCTTTATAGCTCTGGTCGCCGGTGCTGatggtttaatttatttcactcggcttcttttattttcttatattttatttttgggagaATCTTTTCGGaggcaatatttatttttatttttcctgccTGTTGTTCACGCTAAACGCGcttgtttttaattgcataatcgttaattttgattaattgttaCTTTCCATCAGAGGCATGGGATGTTTTGCTTGCAACTCTTTGTAATACCACGGATTTGTCCAAGTTTTCCAGAAGTGCACAAGGCGAAATTATCCTAAGAAGACCGCGAATAAGAATTCCAGACATCTGCAAAGGACCCCGGCtcttcaaagaaaaaagacaaattggCATGAAGATTCGGACAGGATTGAACGGGCAACCGCTGTCACCTGAACGCTGAAGTTTACTTAAATAATAGGCACGAAAAAGCATCGCTAATTTTTCTCCGATGGACATTCATACAGGAGGATCAAAGACGATTTAAACCTTTTCCATAAAGTGATTCCTGGGACATCAATTCCACTATATTTCACCCAGCGATTTATCGTATTTGCTGCGTTGCTTCGCGGTCAATATTTTGCGCACGATAGCGACCCGTTAACCACCGCACATGAAATAATCAAGttgtttttgcatgtgcatTATCCGACTTTATTTCACCCATCTCAGTGACTGAGCACGAGCGCATCGATTGTGTTGCGGCGGACTATGGACGAGCAAGCCCGGATCATGCAGGCTCTCGGCGGTGTCAGCCTGGCCGGTCACTCGGTGCAGGGAGGCATGGCTCTGCCGCCTCCACATGGACACGACGGAACCGATGGGGATGGAAGAAAACAAGACATCGGTGACATTCTGCATCAGATCATGACCATCACCGACCAAAGCCTGGACGAGGCGCAAGCAAAGAAACATGGGCTCAACTGTCACAGAATGAAGCCAGCCCTCTTCAGTGTCCTCTGCGAGATCAAAGAGAAAACAGGTCTAAGTATCCGCGGGGCTCAGGAGGAGGATCCGCCGGATCCACAGCTGATGCGTCTTGACAACATGCTTCTGGCAGAGGGCGTGTCGGGACCGGAGAAGGGCGGAGGAtcagcggcggcggcggcggcggcagcaGCAGCCGGCAGTCCCACTGACAACTCCATCGAGCACTCTGACTACAGGGCCAAACTCTCCCAGATCAGACAGATCTACCATACCGAGCTGGAGAAATATGAGCAGGCATGTAACGAGTTCACTACCCACGTCATGAATCTGTTGAGGGAGCAGTCTCGCACACGGCCCATCTCGCCCAAAGAGATCGAGCGCATGGTCAGCATCATCCATCGCAAATTCAGCTCCATCCAAATGCAACTTAAACAGAGCACCTGTGAGGCCGTCATGATCTTGAGGTCCCGCTTCCTCGATGCCAGACGGAAACGGCGGAACTTCAGCAAGCAGGCGACCGAGATCCTGAATGAGTATTTTTACTCGCATCTTAGTAACCCTTACCCCAGTGAAGAGGCCAAAGAGGAGCTGGCTAAGAAGTGCAGCATAACAGTATCCCAGGTATCCAACTGGTTCGGCAACAAGAGGATCcgctacaaaaaaaacattggcaaGTTCCAAGAGGAAGCCAACCTGTATGCCGCTAAGACAGCCGTGACTGCCGCGCACGCAGCAGCTGCCGCCGTCCAGAATAGTCAGACCAACTCACCCACCACACCCAACTCCGGATTCCAGATGAAAGATGAAGAATTTCAGCTGGACTCTGCAGAGAACAAAAACACTCTATTAACCAACATGTTCACTGGTGGATACCCTGCGCCATGTTATCAGTCAGACGGCAGGATACAATGATGCCCTGGGGGGGAATCCCATGTATAGTCCACATGGCTTGAATggTAACGGGGGATGGCATGATGCTACTACTCCATCCTCTGTGATCTCCCCTACAGAAGGCCCTGGTAGTGTGCACTCTGATACCTCGAACTGATCTCCTCATTGACATGTCCCCTTCCCAATCTGTGGACAACCAATCACAGAATTACAAAACCAcagactgaccaatcagagacaCAGAATAGACTCTCACAGATAATCCAGAAACATCCTCATGGACTCATCCACAGTACTTTTCCACAGTGTTTCGGAAGCTGGACATTTCTTAGCCGTAACATCAGTCCACTGCAATTTTTACTAACAAGCTCTCCTCCAATCATATTAAACCAGTATGTTTTGTTTCCTTTATCATTTGAAGTGTACAAGCTCAAAATgtatgtgaattattattttttttccctctcttttgaCTTTATTACCGGTCATAACCCCTCCCCATTGTTCTAACCAACTGTCGGCAAAGCTTTAGTGCAGGAATACAACTGATACTTAACAAAAGTATATTCATATGATGCTAACCGTTGCATTTAACAGGGCTAAATGCTACAGAAGGCAGCTTGGGGACTTCATCGTTTTTATCAATATCACACCTAGCAATGACTTAAACGAGACCACCTATGGAAGGCAATCCACTCCATTTTGGGGGGTGATTTTTTGAAATACCTGgcaattaatgtctttttttaaaaacacaaatcgcAATCGATATTCAGTCCTCTACGATTAAAGAAAGGAAGTGTAGAAGATGTGAAAAGGAAATATCTTGTTGGACGCAATTTTCAATTCAAAAACGTTCTTGTATATGACATAGCTTGAGAGTATTTATACATCTCACAAATAAATGCTCTGCTTTATTACCTCATTGAAACTCATAGAAAACCaatagatttaaaacatttctttagcTTATAGTGCTCTCACTGACTACCTCTCAACAAAATCACCACCACCACCGTTTTCGTCTTTTACTTTCtgtcattctttttttgtccttttaaaatacattttgttttactttcgTTAGGTTCCATCTTGTAAGAAAtttgctctctctgtctctctctctctctctctctctcgctctcgctctcgctctcgctctttATGTAAtctaatgtatattttaacctTCTAAGAAAACGGAGTTGCTTTGctgcaacttttaaaaaagaaaaaaaagaaaaaaataaccataatattaataatacgaATAACACGGAGAGTATGGAGAGTACAGTGGCTGGCGGAGGGGAAATTTTGTGCTGGAACAGGGAGGGGGAATTACGATCATAAAATTAACACCAAACAGTAAAACTGTTGTAAATACTGaagaacattttgaatgttGCTCATCTTGTTACTAATTcatgcaaaaaagaaataaaaaaattaataaacaaaaacccatgagtaaaaaaataaaaaagaaagaaaacctgTAATGCATAGAGGTTTCAGTATTCAGAATTGTACATTTCAAAACCCTGTGTGACAGGGTTCcaactttctttctctttttttgtatcGTATGTGATTctgaaactgataaaaaaaaaagtcatacaaaaTTTATTTGTGGCAGTGGTTCTAATGTATTAAAGATGTTTCGTGTTTCTTTCTAACCAGACTACACCCTGGACTGAAAAGTCTTCCTTGTGGTAGTTATGTGTAATTTCAAACATGAATAAACTGTTTTCCTTTCATGACA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251684.1 lncRNA downstream 52078 15767668 ~ 15781887 (-) False LOC122351100
XR_006251683.1 lncRNA downstream 52078 15767668 ~ 15781887 (-) True LOC122351100
TU95247 lncRNA downstream 182106 15651636 ~ 15651859 (-) True G64409
TU95187 lncRNA downstream 537744 15295350 ~ 15296221 (-) True G64359
TU95185 lncRNA downstream 540980 15292345 ~ 15292985 (-) True G64357
TU95371 lncRNA upstream 114096 16062879 ~ 16063753 (-) True G64476
XR_006251675.1 lncRNA upstream 130579 16079362 ~ 16094560 (-) True LOC122351008
TU95376 lncRNA upstream 182828 16131611 ~ 16132812 (-) True G64481
XR_006251654.1 lncRNA upstream 312754 16261537 ~ 16283392 (-) True LOC122350933
TU95397 lncRNA upstream 424538 16373321 ~ 16376597 (-) True G64502
XM_043247217.1 mRNA downstream 133115 15652830 ~ 15700850 (-) True mvb12bb
XM_043247213.1 mRNA downstream 185643 15578108 ~ 15648322 (-) True LOC122350591
XM_043248022.1 mRNA upstream 18717 15967500 ~ 15992258 (-) False LOC122351126
XM_043248024.1 mRNA upstream 18718 15967501 ~ 15992258 (-) False LOC122351126
XM_043248023.1 mRNA upstream 18718 15967501 ~ 15992258 (-) False LOC122351126
XM_043248018.1 mRNA upstream 18728 15967511 ~ 15992258 (-) False LOC122351126
XM_043248016.1 mRNA upstream 18728 15967511 ~ 15992258 (-) False LOC122351126
XR_006251609.1 other downstream 133069 15649226 ~ 15700896 (-) False mvb12bb
XR_006251608.1 other downstream 133069 15656919 ~ 15700896 (-) False mvb12bb
TU95181 other downstream 549835 15283861 ~ 15284130 (-) True G64353
TU95023 other downstream 1052255 14779531 ~ 14781710 (-) True G64228
XR_006251614.1 other downstream 1102574 14724208 ~ 14731391 (-) False slc20a1a
TU95424 other upstream 459051 16407834 ~ 16409664 (-) False LOC122350093
TU95703 other upstream 1374277 17323060 ~ 17343739 (-) False LOC122350953
TU95705 other upstream 1376261 17325044 ~ 17401228 (-) False LOC122350953
XR_006251564.1 other upstream 1410602 17359385 ~ 17361850 (-) False zgc:194007
XR_006251566.1 other upstream 1410602 17359385 ~ 17361850 (-) False zgc:194007

Expression Profile