RNA id: XM_043247996.1


Basic Information

Item Value
RNA id XM_043247996.1
length 4910
RNA type mRNA
GC content 0.44
exon number 22
gene id csde1
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11235474 ~ 11250583 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGACCTCTGACCCAGTGGCGTGTCTCCCACAATTCACACGGTACTGTTATATTATCGCGAGAGGTCGCACCGCTCCTCACTACGTAATGTGCCGTGCTGCTTATGGCGGCGCTGGTGACAGTGCTGAAAGCTGTTGggTATGAAGTGTAACCGAATTGATTTTTGTACCATCTGAAACCTACTTCAAGTTCAGATCATCGATCGGTCAGAAGAAACGTcaaggaaaaagaaaacttaaCGAACATCCCCAAAACGACCCAGCGGTATAACAACTCTGAAGACGAGACGAGACCAAGACGAAGAACTGCACTGCTGcaaacgggaaaaaaaaactaaagcaacaCGACACAACCAAATGAGCAAACCAAAGATTTAAGAAACAGAACCAGGCCGCAACGAGCGTAGCAACCAACCATCAACGTTAACAGCAAAGGCGAGACCTGATCTGAGACAAGAAGTTTGTGCCTACTCAACAGCTTTGAAAAAGCACACGTCCCAACGCTGCACCAAGCCCTCCTCATCCTCCCCGCACCTCGTCCTCCTCTGGGGTGCGGAGAGGGCTGCTGTCTGCTAGTCTTTTCAGTTTGACCTTTTTCTTTGTCAATTGCAGACCGAATCCCTgatcttttttcccccccttcGTTTCCCCAGTCTTTCTCTTGTATTTCTGTTCGCTATTTTTCAAAAGCAGTGTTCGTACACCTGCACTTgcctttttatttgtattttttttttttttttttttttgcttttcgttctttatttttgcaactttttCTAACTAGAACGTGTGCCAGAGAGGCGAACcttacaagtgtgtgtgtgcgtgtgcgcttGTGTGAGCCAAATCTGAAGCATCGATTAAGTGATTGATTGGTCCAAATCATTACAGCCTTCCAAGACAACAGAACAAGATGAGTTTTGACCCCAGTCTGCTGCATAATAATGGCCATGGTGGCTTTGCCAATGGAACTGGCATGGGAATTCGTGAGACGGGAGTGGTTGAAAAGCTACTAGCATCATACGGCTTCATTCAGTGTTCTGAGAGGCAGGCCCGCCTCTTCTTTCACTGCTCTCAGTACAACGGCAACCTGCAAGAGCTAAAGATAGGAGATGATGTGGAGTTTGAGGTGTCGTCTGATAGACGCACTGGCAAACCAATTGCTGTGAAGCTAGTAAAAATCAAGGCAGAAATGTTGCCAGAAGAGCGAATCTCTGGGCAGGTGGGGCCTGACTTGCACGCCTCTCCTTTAACTGTGCTGCATGGTTTTATTCATCCAGTAGTGTCAGCTATCCCTTCTCACTTGGATGGGAAGTCTGCACCTGGCCAAGTGCCCACAGGCAGTGTGTGTTACGAAAGGAATGGAGAAGTGTTTTATTTGACCTACACCCCTGAGGATGTTGAAGGCAACGTCACTTTAGATACTGGAGATAAAGTTAGTTTTTACATGGAGACTAACAAGCATACTGGTGCTGTTAGTGCTCACAACATTGTATTGGTAAAGAAGAAACAGTCAAGATGTCAGGGAGTTGTTTGTGCTACCAAGGAGGCCTTTGGATTCATTGAACGAGGGGATGTTGTGAAGGAGATCTTCTTTCACTACAGTGAGTTTAAAGGAGATCTAGAGGCTCTACAAGCTGGAGATGATGTGGAATTCACCATTAAAGAAAGAAACGGCAAGGAAGTGGCCACAGATGTGAGACTGTTGCCCCAAGGCACTGTTATATTTGAGGACATCAGTATTGAGACTTTCGAGGGCACTGTCACCAAGGTTATTCCCAAGGTCCCCACTAAGAATCAGaaCGACCCGCTGCCTGGGCGAATCAGTGCCAGAATTAATTTCACTGACAAAGAGCTGCTATTCGGGGAGAAGGACACCAAGTCCAAAGTGACGCTGCTGGAGGGCGACCACGTCCAATTCAATATATCCACTGACCGTCGGGACAAACTGGAGAGAGCAACAAATATTGACATTCTCCCTGACACCTTCCATTTCACAAAGGAGACCCGAGAAATGGGTGTGATAGCTGCCATGCGTGATGGTTTTGGATTCATCAAATGTGTGGACCGTGATGCCCGAATGTTCTTCCATTTCAGTGAGGTTCTAGAAGAGAGCCAACTGCACATTTCTGATGAAGTGGAATTCACTGTTGTCCCTGACATGCTCTCAGCCCAAAGGAACCATGCCGTGCGGATCAAGAAGCTGCCGAAGGGCACGGTGTCATTCCACACTCAATCTGAGCTTCGTTTTATGGGGGTGGTGGAGAAGGAAGCTGTGCCTGCTACCACTAATAAGAACTCCAGTCCCAGCAAGGGCAAAGAGAAGAAAAAAGACAAGggAAAAGTTGAAAAGGATGCAGAGGAAGGCTTGATTGCGTATGAAGACAGTGGAGTAAAGAGCACGCTTCCCTACTATATTAAAGACCTAGAGGGTTGTGCCTACCCACAGGTTGGAGACAAGGTGGAGTTCTCCATCAGTGAGGTGAAACGTACCGGACAACAAAGCGCTGTGTCCCTCAAGGTCCTTAATCGTGCTGTTGGCACCAAGAGACTTCTGGGATACATAGCAACACTGAAGGACAACTTCGGCTTCATAGAAACAGCCAACCACGATCAGGAGATTTTCTTTCACTACAGTGAGGTGTGTGGGGATGTGGATAACATGGACCTGGGGGATACAGTGGAGTACACACTATCCAAAGGCAAAGGAAACAAAATCAGTGCTGAGAAGGTCACCAAAGTTGCAGCTGtgaatGGCGTAGGAGAGGATGTGAGTAATACAGTATTCCTGGGGAGAGTGGTTCGGCCATTACGCAGTGTGGACCCTTCTCAGACTGATTATCAAGGCCTTATTGAGATTACAGAGGAAGGAGCCAATAAGGGTCAGAACTATCCATTCGGCATTGTTGGTATGGCCAATAAAGGTGACTGTCTGCAAAAGGGTGAGATGGTGAAGTTTCAGTCATGCACAGTGACCCAGACAGGACAAAAGATGGCCTGCAATATTGTGCCTCAGCGTAGAGCCCTGGTGGAGTGCGTCAAAGATCAGTTTGGTTTCATCACATATGAAGTTGGAGAGAGCAAGAAGCTGTTTTTCCATGTCAAGGAGGTGCAGGATGGTCTGGAGCTCCAGGCTGGTGATGAAGTGGAGTTTTCAGTTATCCTGAACCAACGCACGGGCAAATGCAGTGCCTGCAATGTTCGCAGAGTCAGtgagGGTCCAAAACCAGTAGCAACACCTCGACCTGACAGACTGGTTAATCGTTTGAAGAGCATCACTCTCGATGACACCAACGCTCCCCGTCTTGTTATTATCAGGCAGCCTCGTGGCCCAGACAATtcgaagGGCTTCAATGTAGAGAGGAAATCCCGCCAACCTGGTGTTACTGACTGAGTACTGTTTAcccctctcttcctcctcctcctcctcctcctcacaaTGGAAGAAACACCTTGAAGAAAAGCAATCAGGCAGAGGGCAGAGGAAGGGATTTGTGTGTCGGTTTAGCTCACTCTCATTTTATCTCTCACCCATAAACACAATTCACAGAGTAACAAACATCACGCATCAAGACTTGAAAATTAGCACACACAATTTCCTTCCTTTTTGTGACAGGAtcccttgcaaaaaaaaaagaaatcctcATCTCATTGTATGCGTGATGTTTTTGTGTGGTTGTATTTTGAGCAAAACCCCTCGTGTtgtatgagtgagtgagtgtgtgtgtgtgtgtgtggtatgcATCACATGTAAACTTGTAAGGTTATGCAGAGGATATGAGGGGAAATAAGGGGCTTGTAGTTTCCACATCTTTAGATTGAGATGTGGGCACTATTTTGACCCGTTTTTCATTTCTGATGAAACTGAAATGCCAGGAATTCTGCACCTGCTGCTGTGTGAGTGAGTTATTGTTTTAGAGTAGCTTTGCCTGTCTGTATTTTGCCCTTcgttatatatatactttattctTCCTGTATCACTTGAATTCTTCCTATGTTAAGTTTCTCACCCAGGTCAAATCAAGATATTGCTGGGCTCTTTCTGCTGAGAAATAAAATGGATTTGAGGTTCTTTTCACTCACGTTTTCCATACCGATTCCCTAGGTTTTTAACATGGATCTGAAACCTTAATAAATTTACTCTCCGCTCAGAACTCGCTTGTGTATGGTTTTTGATGTGTAAGTGactatttgatttatttttttaattaaattggcTTGTGATCTATTTAAAGAGCCTTTATTTTAATTCCTGTTTCAATTTTCATAAGCTCTGTTTATGGGCAAGTGCAGAATTCCTAATGGCATCTTGTAGCCTGCGgtcctttttttatatagctttttctttgcacatgtacttttctttttcctttttgagttCTACTTAATGTCtgctaatgaataaattaataaagaaaaaggtgcctaaaaacataaaaaattaaaaggaaaaaaaaattggtgtCTATCCTCGAACGGCCACCAAAATATAAGAGCAATTGTAGggtggctcttttttttttttttttttttttttttttttctctctctccccccaaGTAGAGAATACTGGTGTGCATCCCCCCATACCTGTGGGTTGACATATACTCTATGTAATGTGTGCTTTTACTTGGGTGGACTTTTTGAAAACctgaataaaacaagcaaatgtaTGCAGGCCATGAAAAATGGGGGAAGTGTAatgattaaaatttaaaaacgtGCAAAGAAATTTGATTATGTGGATGGAGGCTATTTGCAGTGCTTCTTATGACAAATGGAGCTATTACTGTCATGAATATTCTCTGGAGCACCCTGGGTTTGTGTTGAACCTTAAGGTTCTCCTATATACTTTTGTTAATGGTCTTGAATGAAAcaattgaaataaacattttatgagaATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93238 lncRNA downstream 25313 11201695 ~ 11210161 (-) True G62977
TU93235 lncRNA downstream 30101 11197153 ~ 11205373 (-) True G62974
TU93215 lncRNA downstream 66001 11131670 ~ 11169473 (-) True smim1
XR_006251671.1 lncRNA downstream 410423 10819217 ~ 10825051 (-) True LOC122351000
TU93075 lncRNA downstream 478562 10756533 ~ 10756912 (-) False LOC122350960
TU93256 lncRNA upstream 25776 11276359 ~ 11276914 (-) True G62992
TU93312 lncRNA upstream 156371 11406954 ~ 11441818 (-) False G63014
TU93307 lncRNA upstream 182198 11432781 ~ 11441818 (-) False G63014
TU93310 lncRNA upstream 182198 11432781 ~ 11441818 (-) False G63014
TU93299 lncRNA upstream 187163 11437746 ~ 11441996 (-) True G63014
XM_043246077.1 mRNA downstream 3471 11229329 ~ 11232003 (-) True apex2
XM_043246930.1 mRNA downstream 7353 11223040 ~ 11228121 (-) True lrif1
XM_043247639.1 mRNA downstream 66219 11168084 ~ 11169255 (-) False smim1
XM_043247640.1 mRNA downstream 66375 11168081 ~ 11169099 (-) False smim1
XM_043246055.1 mRNA downstream 76188 11141183 ~ 11159286 (-) True LOC122349917
XM_043246231.1 mRNA upstream 298 11250881 ~ 11256508 (-) True porcnl
XM_043246617.1 mRNA upstream 33771 11284354 ~ 11345988 (-) True LOC122350269
XM_043246404.1 mRNA upstream 100721 11351304 ~ 11392669 (-) False magixa
XM_043246402.1 mRNA upstream 100721 11351304 ~ 11392669 (-) True magixa
XM_043246405.1 mRNA upstream 100721 11351304 ~ 11392668 (-) False magixa
TU93213 other downstream 104267 11097002 ~ 11131207 (-) False LOC122349915
TU93206 other downstream 244770 10987446 ~ 10990704 (-) False cep104
unassigned_transcript_1293 other downstream 695183 10540219 ~ 10540291 (-) True trnar-ccg_26
TU92984 other downstream 756789 10440764 ~ 10478685 (-) False G62826
TU92903 other downstream 843431 10389183 ~ 10392043 (-) True G62760
TU93259 other upstream 73321 11323904 ~ 11345858 (-) False LOC122350269
TU93421 other upstream 311695 11562278 ~ 11564405 (-) False G63095
TU93424 other upstream 311695 11562278 ~ 11564405 (-) False G63095
TU93426 other upstream 311695 11562278 ~ 11564405 (-) False G63095
TU93692 other upstream 527688 11778271 ~ 11779251 (-) True G63274

Expression Profile