Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU72210 |
| length | 1502 |
| lncRNA type | antisense_over |
| GC content | 0.38 |
| exon number | 3 |
| gene id | G63399 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000010 |
| NCBI id | null |
| chromosome length | 12265998 |
| location | 5691435 ~ 5694008 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU72194 | lncRNA | upstream | 31996 | 5659219 ~ 5659439 (+) | True | G63390 |
| TU72189 | lncRNA | upstream | 45638 | 5644656 ~ 5645797 (+) | True | G63386 |
| TU72186 | lncRNA | upstream | 48358 | 5642877 ~ 5643077 (+) | True | G63384 |
| TU72133 | lncRNA | upstream | 53203 | 5634187 ~ 5638232 (+) | True | G63332 |
| TU72129 | lncRNA | upstream | 99583 | 5591376 ~ 5591852 (+) | True | G63328 |
| TU72217 | lncRNA | downstream | 1437 | 5695445 ~ 5698465 (+) | False | G63403 |
| TU72220 | lncRNA | downstream | 21708 | 5715716 ~ 5717250 (+) | True | G63405 |
| TU72261 | lncRNA | downstream | 187187 | 5881195 ~ 5881600 (+) | True | G63442 |
| TU72262 | lncRNA | downstream | 188760 | 5882768 ~ 5883651 (+) | True | G63443 |
| TU72134 | lncRNA | downstream | 394231 | 6088239 ~ 6089177 (+) | True | G63333 |
| CI01000010_05523602_05535371.mRNA | mRNA | upstream | 155743 | 5523516 ~ 5535692 (+) | True | CI01000010_05523602_05535371 |
| CI01000010_05494740_05504597.mRNA | mRNA | upstream | 186174 | 5493967 ~ 5505261 (+) | True | CI01000010_05494740_05504597 |
| CI01000010_05477048_05482911.mRNA | mRNA | upstream | 208134 | 5476525 ~ 5483301 (+) | True | CI01000010_05477048_05482911 |
| CI01000010_05414058_05426498.mRNA | mRNA | upstream | 264748 | 5414058 ~ 5426687 (+) | True | CI01000010_05414058_05426498 |
| CI01000010_05359191_05385419.mRNA | mRNA | upstream | 305751 | 5359191 ~ 5385684 (+) | True | CI01000010_05359191_05385419 |
| CI01000010_05789479_05790006.mRNA | mRNA | downstream | 94324 | 5788332 ~ 5790204 (+) | False | CI01000010_05789479_05790006 |
| CI01000010_05819188_05855120.mRNA | mRNA | downstream | 125180 | 5819188 ~ 5855163 (+) | True | CI01000010_05819188_05855120 |
| CI01000010_05859214_05887437.mRNA | mRNA | downstream | 165206 | 5859214 ~ 5888267 (+) | True | CI01000010_05859214_05887437 |
| CI01000010_05902969_05911426.mRNA | mRNA | downstream | 208961 | 5902969 ~ 5912165 (+) | True | CI01000010_05902969_05911426 |
| CI01000010_06014142_06037829.mRNA | mRNA | downstream | 320134 | 6014142 ~ 6038450 (+) | True | CI01000010_06014142_06037829 |
| TU71841 | other | upstream | 1037442 | 4640841 ~ 4653993 (+) | False | CI01000010_04640858_04683752 |
| TU71842 | other | upstream | 1039668 | 4640841 ~ 4651767 (+) | True | CI01000010_04640858_04683752 |
| TU71738 | other | upstream | 1242108 | 4448172 ~ 4449327 (+) | True | G62983 |
| TU71580 | other | upstream | 1751490 | 3937757 ~ 3939945 (+) | True | G62856 |
| TU71560 | other | upstream | 1797642 | 3890095 ~ 3893793 (+) | True | G62838 |
| TU72215 | other | downstream | 1437 | 5695445 ~ 5707085 (+) | False | G63403 |
| TU72214 | other | downstream | 3415 | 5697423 ~ 5699465 (+) | False | G63403 |
| TU72216 | other | downstream | 10073 | 5704081 ~ 5707085 (+) | True | G63403 |
| TU72219 | other | downstream | 13963 | 5707971 ~ 5717250 (+) | False | G63405 |
| TU72237 | other | downstream | 62945 | 5756953 ~ 5757934 (+) | True | G63420 |
