RNA id: TU72261


Basic Information

Item Value
RNA id TU72261
length 372
lncRNA type intronic
GC content 0.40
exon number 2
gene id G63442
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 5881195 ~ 5881600 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTATAGGTGTCGTTCATCAAAATTAACTATGGACCAAGGATATTATTCAGTCCTGTCACTCATGACCATAGTATAGAGCAGGAGAAAAGAAGAGAGCACACCAGGAGTTTTGGGGTGGATTTTCCCTCTCCAGAGCACCAGTGCAGCTTCTTCTCTTTAAATCCCTTTAATTCGACGATCCTCTGGGCAGACACCAGCTGTCCTCTTCTCTTCTATCTGTCTATCTCTCTTTTTCTCTGTCCCTACACTTATATCCATCCCTTTTTCTATTTCTCACACCTTCTGTTGCTCCCCATATAATTTCCTGTTTTATTTTTATTTATTTTTTTGTTTTGTAAGGCGCTTTGGATAAAAAGGGTCTGCTAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72220 lncRNA upstream 163945 5715716 ~ 5717250 (+) True G63405
TU72217 lncRNA upstream 182730 5695445 ~ 5698465 (+) False G63403
TU72210 lncRNA upstream 187187 5691435 ~ 5694008 (+) True G63399
TU72194 lncRNA upstream 221756 5659219 ~ 5659439 (+) True G63390
TU72189 lncRNA upstream 235398 5644656 ~ 5645797 (+) True G63386
TU72262 lncRNA downstream 1168 5882768 ~ 5883651 (+) True G63443
TU72134 lncRNA downstream 206639 6088239 ~ 6089177 (+) True G63333
TU72128 lncRNA downstream 217818 6099418 ~ 6101358 (+) True CI01000010_06093805_06101291
TU72119 lncRNA downstream 221257 6105372 ~ 6105686 (+) True G63318
TU72316 lncRNA downstream 278032 6159632 ~ 6159848 (+) True G63497
CI01000010_05819188_05855120.mRNA mRNA upstream 26032 5819188 ~ 5855163 (+) True CI01000010_05819188_05855120
CI01000010_05789479_05790006.mRNA mRNA upstream 90991 5788332 ~ 5790204 (+) False CI01000010_05789479_05790006
CI01000010_05523602_05535371.mRNA mRNA upstream 345503 5523516 ~ 5535692 (+) True CI01000010_05523602_05535371
CI01000010_05494740_05504597.mRNA mRNA upstream 375934 5493967 ~ 5505261 (+) True CI01000010_05494740_05504597
CI01000010_05477048_05482911.mRNA mRNA upstream 397894 5476525 ~ 5483301 (+) True CI01000010_05477048_05482911
CI01000010_05902969_05911426.mRNA mRNA downstream 21369 5902969 ~ 5912165 (+) True CI01000010_05902969_05911426
CI01000010_06014142_06037829.mRNA mRNA downstream 132542 6014142 ~ 6038450 (+) True CI01000010_06014142_06037829
CI01000010_06043120_06058750.mRNA mRNA downstream 161520 6043120 ~ 6058823 (+) True CI01000010_06043120_06058750
CI01000010_06062478_06073546.mRNA mRNA downstream 180878 6062478 ~ 6073792 (+) True CI01000010_06062478_06073546
CI01000010_06074779_06076207.mRNA mRNA downstream 192827 6074427 ~ 6076280 (+) True CI01000010_06074779_06076207
TU72237 other upstream 91208 5756953 ~ 5757934 (+) True G63420
TU72219 other upstream 163945 5707971 ~ 5717250 (+) False G63405
TU72215 other upstream 174110 5695445 ~ 5707085 (+) False G63403
TU72216 other upstream 174110 5704081 ~ 5707085 (+) True G63403
TU72214 other upstream 181730 5697423 ~ 5699465 (+) False G63403
TU72351 other downstream 492958 6374558 ~ 6374667 (+) False G63524
TU72352 other downstream 492958 6374558 ~ 6374667 (+) True G63524
TU72350 other downstream 504242 6424211 ~ 6424688 (+) True CI01000010_06399511_06426913
TU72416 other downstream 704328 6585928 ~ 6617806 (+) True G63572
TU74882 other downstream 3150947 9032547 ~ 9038005 (+) False G65803

Expression Profile