RNA id: TU232198


Basic Information

Item Value
RNA id TU232198
length 238
lncRNA type sense_over
GC content 0.35
exon number 1
gene id CI01000048_00693752_00694265
representative True

Chromosome Information

Item Value
chromosome id CI01000048
NCBI id null
chromosome length 1528931
location 693072 ~ 694474 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATACTGGAGACCATCCCAAGAGAGTAGAAAATGGAGTGCAGTACTAGCAGCAGATGAAAAGGAAACCATACCAGAAAAGCAACAAAAAGCACCACAGACTTTATCACCAAATAAATGGGATGTACGATAAATGGCAGTGTACAAATAAACGTGAACAATTGTCTGAACCATCACTCGCAGTAGATCAGCTATGTATTAAATTTACATCTTATACGATATTTTATATTGATGTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232197 lncRNA upstream 647 693282 ~ 693590 (+) False CI01000048_00693752_00694265
TU232196 lncRNA upstream 3798 689967 ~ 690439 (+) True G204573
TU232195 lncRNA upstream 4704 688996 ~ 689533 (+) True G204572
TU232194 lncRNA upstream 6017 688018 ~ 688220 (+) True G204571
TU232193 lncRNA upstream 6510 684342 ~ 687727 (+) True G204570
TU232199 lncRNA downstream 460 694934 ~ 751948 (+) True G204576
TU232226 lncRNA downstream 29235 723709 ~ 886034 (+) False G204592
TU232263 lncRNA downstream 68555 763029 ~ 764695 (+) True G204625
TU232275 lncRNA downstream 81998 776472 ~ 785524 (+) True G204635
TU232228 lncRNA downstream 128906 823380 ~ 886034 (+) False G204592
CI01000048_00659494_00667971.mRNA mRNA upstream 24758 659022 ~ 669479 (+) False CI01000048_00659494_00667971
CI01000048_00567988_00568484.mRNA mRNA upstream 125185 567988 ~ 569052 (+) True CI01000048_00567988_00568484
CI01000048_00425103_00519682.mRNA mRNA upstream 174347 425103 ~ 519890 (+) True CI01000048_00425103_00519682
CI01000048_00403297_00404487.mRNA mRNA upstream 289623 403232 ~ 404614 (+) False CI01000048_00403297_00404487
CI01000048_00261577_00264226.mRNA mRNA upstream 428695 261400 ~ 265542 (+) False CI01000048_00261577_00264226
CI01000048_00705234_00707566.mRNA mRNA downstream 10387 704861 ~ 707608 (+) True CI01000048_00705234_00707566
CI01000048_00713811_00714700.mRNA mRNA downstream 19005 713479 ~ 714947 (+) True CI01000048_00713811_00714700
CI01000048_00809677_00812096.mRNA mRNA downstream 115203 809677 ~ 813160 (+) True CI01000048_00809677_00812096
CI01000048_01003499_01009234.mRNA mRNA downstream 308274 1002748 ~ 1010512 (+) True CI01000048_01003499_01009234
CI01000048_01067628_01068912.mRNA mRNA downstream 372892 1067366 ~ 1070343 (+) True CI01000048_01067628_01068912
TU232180 other upstream 32381 660719 ~ 661856 (+) False CI01000048_00659494_00667971
TU232089 other upstream 332576 361025 ~ 361661 (+) True G204472
TU232014 other upstream 408490 285270 ~ 285747 (+) True G204409
TU231798 other upstream 630640 63188 ~ 63597 (+) True G204233
TU232496 other downstream 298981 993455 ~ 993969 (+) False G204824
TU232648 other downstream 519898 1214372 ~ 1215807 (+) True CI01000048_01214358_01215546
TU232734 other downstream 688481 1382955 ~ 1383698 (+) True G205026

Expression Profile