Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00017688 |
| length | 5619 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 7 |
| gene id | XLOC_008968 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 4101254 ~ 4124099 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006302 | double-strand break repair | biological_process |
| GO:0006325 | chromatin organization | biological_process |
| GO:0045739 | positive regulation of DNA repair | biological_process |
| GO:0035518 | histone H2A monoubiquitination | biological_process |
| GO:0070535 | histone H2A K63-linked ubiquitination | biological_process |
| GO:0036351 | histone H2A-K13 ubiquitination | biological_process |
| GO:0036352 | histone H2A-K15 ubiquitination | biological_process |
| GO:0006974 | cellular response to DNA damage stimulus | biological_process |
| GO:0034244 | negative regulation of transcription elongation from RNA polymerase II promoter | biological_process |
| GO:0045190 | isotype switching | biological_process |
| GO:0010212 | response to ionizing radiation | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0033522 | histone H2A ubiquitination | biological_process |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0035861 | site of double-strand break | cellular_component |
| GO:0000151 | ubiquitin ligase complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0042393 | histone binding | molecular_function |
| GO:0070530 | K63-linked polyubiquitin modification-dependent protein binding | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0043130 | ubiquitin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-6013 | Predicted to enable several functions, including K63-linked polyubiquitin modification-dependent protein binding activity; ubiquitin binding activity; and ubiquitin-protein transferase activity. Predicted to be involved in several processes, including DNA metabolic process; histone H2A ubiquitination; and regulation of nucleobase-containing compound metabolic process. Predicted to act upstream of or within DNA repair and chromatin organization. Predicted to be located in nucleus and site of double-strand break. Predicted to be part of ubiquitin ligase complex. Human ortholog(s) of this gene implicated in RIDDLE syndrome. Orthologous to human RNF168 (ring finger protein 168). |
| ensembl_id | ENSDART00000185583 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00019117 | lncRNA | downstream | 340297 | 3754566 ~ 3760957 (-) | True | XLOC_008957 |
| TCONS_00019116 | lncRNA | downstream | 938795 | 3160438 ~ 3162459 (-) | True | XLOC_008952 |
| TCONS_00019115 | lncRNA | downstream | 984992 | 3115337 ~ 3116262 (-) | True | XLOC_008951 |
| TCONS_00017662 | lncRNA | downstream | 1170233 | 2918257 ~ 2931021 (-) | True | XLOC_008946 |
| TCONS_00019114 | lncRNA | downstream | 1285112 | 2813516 ~ 2816142 (-) | True | XLOC_008942 |
| TCONS_00019118 | lncRNA | upstream | 39479 | 4163578 ~ 4174873 (-) | True | XLOC_008970 |
| TCONS_00017697 | lncRNA | upstream | 298382 | 4422481 ~ 4436431 (-) | False | XLOC_008974 |
| TCONS_00017701 | lncRNA | upstream | 304919 | 4429018 ~ 4445598 (-) | False | XLOC_008974 |
| TCONS_00017703 | lncRNA | upstream | 320961 | 4445060 ~ 4485867 (-) | True | XLOC_008974 |
| TCONS_00018810 | lncRNA | upstream | 1078152 | 5202251 ~ 5203167 (-) | True | XLOC_008986 |
| TCONS_00017687 | mRNA | downstream | 6366 | 4085623 ~ 4094888 (-) | True | XLOC_008967 |
| TCONS_00017686 | mRNA | downstream | 34096 | 4062000 ~ 4067158 (-) | True | XLOC_008966 |
| TCONS_00017685 | mRNA | downstream | 48105 | 4049222 ~ 4053149 (-) | True | XLOC_008965 |
| TCONS_00017684 | mRNA | downstream | 63628 | 4036709 ~ 4037626 (-) | True | XLOC_008964 |
| TCONS_00017683 | mRNA | downstream | 73887 | 4018362 ~ 4027367 (-) | True | XLOC_008963 |
| TCONS_00017690 | mRNA | upstream | 4461 | 4128560 ~ 4152582 (-) | True | XLOC_008969 |
| TCONS_00017691 | mRNA | upstream | 48189 | 4172288 ~ 4314097 (-) | False | XLOC_008971 |
| TCONS_00017692 | mRNA | upstream | 188980 | 4313079 ~ 4314042 (-) | True | XLOC_008971 |
| TCONS_00017693 | mRNA | upstream | 229062 | 4353161 ~ 4415917 (-) | True | XLOC_008972 |
| TCONS_00017695 | mRNA | upstream | 297698 | 4421797 ~ 4528387 (-) | False | XLOC_008974 |
| TCONS_00017655 | other | downstream | 1364756 | 2736383 ~ 2736498 (-) | True | XLOC_008940 |
| TCONS_00017647 | other | downstream | 1475591 | 2625028 ~ 2625663 (-) | True | XLOC_008933 |
| TCONS_00017639 | other | downstream | 1835171 | 2265969 ~ 2266083 (-) | True | XLOC_008927 |
| TCONS_00017627 | other | downstream | 2263371 | 1834971 ~ 1837883 (-) | True | XLOC_008922 |
| TCONS_00017597 | other | downstream | 2779348 | 1321790 ~ 1321906 (-) | True | XLOC_008910 |
| TCONS_00017694 | other | upstream | 241059 | 4365158 ~ 4365272 (-) | True | XLOC_008973 |
| TCONS_00017700 | other | upstream | 302395 | 4426494 ~ 4482147 (-) | False | XLOC_008974 |
| TCONS_00017702 | other | upstream | 311366 | 4435465 ~ 4482230 (-) | False | XLOC_008974 |
| TCONS_00017735 | other | upstream | 1258963 | 5383062 ~ 5383180 (-) | True | XLOC_008997 |
| TCONS_00017752 | other | upstream | 1665239 | 5789338 ~ 5795415 (-) | False | XLOC_009005 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000092_01307631_01315805.mRNA | True | 1735 | mRNA | 0.50 | 6 | CI01000092 | 1307315 ~ 1315805 (-) |
