Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003287 |
| length | 1012 |
| lncRNA type | sense_over |
| GC content | 0.52 |
| exon number | 12 |
| gene id | XLOC_000909 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 152007 ~ 157563 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0071033 | nuclear retention of pre-mRNA at the site of transcription | biological_process |
| GO:0006368 | transcription elongation from RNA polymerase II promoter | biological_process |
| GO:0000973 | posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery | biological_process |
| GO:0016973 | poly(A)+ mRNA export from nucleus | biological_process |
| GO:0070390 | transcription export complex 2 | cellular_component |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ko03019 | Messenger RNA biogenesis |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003285 | lncRNA | downstream | 5392 | 108285 ~ 147846 (-) | True | XLOC_000907 |
| TCONS_00003286 | lncRNA | downstream | 11119 | 141289 ~ 142119 (-) | True | XLOC_000908 |
| TCONS_00001439 | lncRNA | downstream | 42434 | 108285 ~ 110804 (-) | False | XLOC_000907 |
| TCONS_00001433 | lncRNA | downstream | 81744 | 65705 ~ 71494 (-) | False | XLOC_000906 |
| TCONS_00001438 | lncRNA | downstream | 81766 | 67890 ~ 71472 (-) | True | XLOC_000906 |
| TCONS_00002894 | lncRNA | upstream | 32180 | 189734 ~ 191985 (-) | True | XLOC_000911 |
| TCONS_00002895 | lncRNA | upstream | 41972 | 199526 ~ 201194 (-) | False | XLOC_000910 |
| TCONS_00002896 | lncRNA | upstream | 51575 | 209129 ~ 210813 (-) | True | XLOC_000912 |
| TCONS_00001454 | lncRNA | upstream | 186063 | 343617 ~ 345895 (-) | False | XLOC_000914 |
| TCONS_00001463 | lncRNA | upstream | 322253 | 479807 ~ 484588 (-) | False | XLOC_000918 |
| TCONS_00001435 | mRNA | downstream | 81715 | 65705 ~ 71523 (-) | False | XLOC_000906 |
| TCONS_00001434 | mRNA | downstream | 81715 | 65705 ~ 71523 (-) | False | XLOC_000906 |
| TCONS_00001437 | mRNA | downstream | 81768 | 67887 ~ 71470 (-) | False | XLOC_000906 |
| TCONS_00001436 | mRNA | downstream | 83794 | 66283 ~ 69444 (-) | False | XLOC_000906 |
| TCONS_00001432 | mRNA | downstream | 88221 | 60987 ~ 65017 (-) | True | XLOC_000905 |
| TCONS_00001447 | mRNA | upstream | 2748 | 160302 ~ 201004 (-) | False | XLOC_000910 |
| TCONS_00001448 | mRNA | upstream | 27361 | 184915 ~ 191971 (-) | False | XLOC_000911 |
| TCONS_00001449 | mRNA | upstream | 27362 | 184916 ~ 192033 (-) | False | XLOC_000911 |
| TCONS_00001450 | mRNA | upstream | 42740 | 200294 ~ 206208 (-) | True | XLOC_000910 |
| TCONS_00001451 | mRNA | upstream | 50627 | 208181 ~ 214911 (-) | False | XLOC_000912 |
| TCONS_00001429 | other | downstream | 103403 | 47954 ~ 49835 (-) | False | XLOC_000904 |
| TCONS_00001421 | other | downstream | 108692 | 42204 ~ 44546 (-) | False | XLOC_000903 |
| TCONS_00001460 | other | upstream | 310189 | 467743 ~ 471925 (-) | True | XLOC_000917 |
| TCONS_00001476 | other | upstream | 463471 | 621025 ~ 625080 (-) | False | XLOC_000923 |
| TCONS_00001485 | other | upstream | 893387 | 1050941 ~ 1051057 (-) | True | XLOC_000930 |
| TCONS_00001486 | other | upstream | 1156051 | 1313605 ~ 1315753 (-) | True | XLOC_000932 |
| TCONS_00001492 | other | upstream | 1713307 | 1870861 ~ 1875118 (-) | False | XLOC_000939 |
