RNA id: TCONS_00001449


Basic Information

Item Value
RNA id TCONS_00001449
length 1021
RNA type mRNA
GC content 0.51
exon number 4
gene id XLOC_000911
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 184915 ~ 192033 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATTAATCGCGCGTGTTGTTGTCGGTCGCCGATGATGCGCGCGCGCTGAAGTTCGCGAGTTGTCGAGCGCGCGCTGGATGTTACCGGTGCCGTTACCGGAGCGGCAGGTTGTTCAGCTGTCTGTCCCGCGGGAGAAGCGGAGCCATTACTGTGGCGGTGTGTGCGGGAAAAGTTTGTCTGCTCAGCGGCGTCCATGAGCGGTGAATGGAGGAGACCCGGAGCCCGgaggactgaacatgGAAGCTCATGCAGGATCAGGGTGTGATGTGGACTCTGGTGGTCTCGCGCTGGTTCATCTGCCTGTTCATCGACGTGCTGCCCGTGGAGACGGTGCTGCGCATCTGGGACTGCCTGTTCTACGAGGGCTCCAAGATCCTGTTCCGCGTGGCTCTGACTCTGATCCGACACCACCAGCAGGAGATCGCTGAGGCGCAGAACCTGCCGGACGTCTGTGAACGCTTCAAACGCATCACCAGAGGAGCCTTCGTGGAGGACTGCCACACTTTCATGCAGaAAATCTTCCAGGAGCCCGGCAGTCTCTCTATGGCCACTGTGTCGAAGCTGCGGGAAAGCTGCCGCGCTCGGATCATCGCTGACGAATCCTGAAACATTCCCTCTGATAGTCTGCACTAAAGAGTCTGTTTTAAAGACCTgtattttcttacatttatagaaagtgtgtgtgtgtgtagatgtagCATAAATCCTAGATGCTGGACTCTCTTTAAGCTCGAATGTCTCTAAGTTTCAGACCAATAATACTGTGAATTAAACCAACGGCTCGTGATGAGATCTAGACTGATGTTCTTCACACTACAGCTGTCGGGAGGTAGCCGCAGTAAGAGCACTAATGTCTTCAAGactgtttatttttaatacaggTCAGATTCTGCTGGAGAAACACTCGTGGATCATGATGCTCCTTTAAACTCATTTCCATTACAGCCACTTTATAAATCCTGCATAAGCACAACTGATATTTGTCTACAGAACTCATTTAATAAAGATAAAGATCTTGGC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2733 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Is expressed in hatching gland and polster. Orthologous to human GRTP1 (growth hormone regulated TBC protein 1).

Ensembl:

ensembl_id ENSDART00000159237

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003287 lncRNA downstream 27362 153238 ~ 157554 (-) False XLOC_000909
TCONS_00001443 lncRNA downstream 27362 153643 ~ 157554 (-) False XLOC_000909
TCONS_00001446 lncRNA downstream 27383 155770 ~ 157533 (-) True XLOC_000909
TCONS_00003288 lncRNA downstream 27385 154086 ~ 157531 (-) False XLOC_000909
TCONS_00001445 lncRNA downstream 27385 154613 ~ 157531 (-) False XLOC_000909
TCONS_00002895 lncRNA upstream 7493 199526 ~ 201194 (-) False XLOC_000910
TCONS_00002896 lncRNA upstream 17096 209129 ~ 210813 (-) True XLOC_000912
TCONS_00001454 lncRNA upstream 151584 343617 ~ 345895 (-) False XLOC_000914
TCONS_00001463 lncRNA upstream 287774 479807 ~ 484588 (-) False XLOC_000918
TCONS_00001467 lncRNA upstream 319738 511771 ~ 513717 (-) True XLOC_000919
TCONS_00001440 mRNA downstream 27353 152007 ~ 157563 (-) False XLOC_000909
TCONS_00001441 mRNA downstream 28541 152316 ~ 156375 (-) False XLOC_000909
TCONS_00001435 mRNA downstream 113393 65705 ~ 71523 (-) False XLOC_000906
TCONS_00001450 mRNA upstream 8261 200294 ~ 206208 (-) True XLOC_000910
TCONS_00001451 mRNA upstream 16148 208181 ~ 214911 (-) False XLOC_000912
TCONS_00001452 mRNA upstream 120751 312784 ~ 338445 (-) True XLOC_000913
TCONS_00001453 mRNA upstream 151259 343292 ~ 354166 (-) False XLOC_000914
TCONS_00001455 mRNA upstream 158807 350840 ~ 354115 (-) True XLOC_000914
TCONS_00001442 other downstream 31070 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001429 other downstream 135081 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 140370 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001460 other upstream 275710 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001476 other upstream 428992 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001485 other upstream 858908 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 1121572 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001492 other upstream 1678828 1870861 ~ 1875118 (-) False XLOC_000939

Expression Profile

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