RNA id: TCONS_00001503


Basic Information

Item Value
RNA id TCONS_00001503
length 990
RNA type mRNA
GC content 0.46
exon number 1
gene id XLOC_000942
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2060430 ~ 2061419 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTCTAAACCCTTACTACGGCCTGACTAACACATCGAACGACAACTGCACAGATGTGGACAACCTGGTGAAGCGCTACTATCTGCCAACCATGTATGCTATCATCTGCGTTGTGGGTGCTATTGGAAACATCACAGCTCTTCTGGTGTTTGTACTCAGGATTCGACCCTGGAGGAGCAGCACCATCATCATGGTGAACCTGATCTTCACAGATCTTCTCTTAATAATCTCCCTGCCGATTTTTGTCTACTATTATGTGCTGAATGACTCGTGGACTCTGGGAATCACCATGTGTCGCTTCTCCCGCTTCGACTTCCACTTCAACCTGTACGGCAGCATCCTAGCCCTCACATGCATCTCCGTTATTCGCTATGTAGTAATCGTGCATCCACAGCATGCAGAAAATATTAGCCGAAAACGCTGGGGCATCATGTCTTGCATGTTGTTTTGGATCATTACGGTAGTTGAACTTAGTCCAATTTTTAATCTTTTTGCAACAGTGGAGATCGATAACAAAACATACTGTTTGGATTTTGCGAGCAATGATCCACAGAGTGTTTGGCCGTATAGTTGGGTGTTGACTGTACTCGGGTTTTTAGTTCCTTTGGTGGTGGTCTGTGTCTGCTATTGGCGCATCATCGAAAAGTTAAAGGAGGGTCCTCATACGGGGAGCACCTCACGTTTATTGGCGAGGAGAGTCATTGTGTTGATTATTACGTGTTTTGCAGTTTGTTTTCTTCCGTATCATGTGCTGCGTGCATTTAGAGTCTACACGAGGCTCACGCCAGAGACGAACTGTATGCTGGATCATGGCGTTCATGCGGCCTACATCATCTCCAGACCCATCGCAGTGCTCAACATCATCTTCAACATGGTGCTGTACACGATGCAGGGCGGTAACTTTAAACAGGCTTTTGTGGAGCTCTTCAAATGTAAGAAACTCAAGTCGAAGACTGAAAGGACTGTTGAAATGGCGGTGATCAACTAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-23 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human OXGR1 (oxoglutarate receptor 1).

Ensembl:

ensembl_id ENSDART00000058878

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003301 lncRNA downstream 54895 2000666 ~ 2005535 (-) True XLOC_000940
TCONS_00003300 lncRNA downstream 54908 2000666 ~ 2005522 (-) False XLOC_000940
TCONS_00003299 lncRNA downstream 54918 2000666 ~ 2005512 (-) False XLOC_000940
TCONS_00003298 lncRNA downstream 54922 2000666 ~ 2005508 (-) False XLOC_000940
TCONS_00003297 lncRNA downstream 55224 2000666 ~ 2005206 (-) False XLOC_000940
TCONS_00003302 lncRNA upstream 32577 2093996 ~ 2096349 (-) False XLOC_000944
TCONS_00003303 lncRNA upstream 32577 2093996 ~ 2101261 (-) True XLOC_000944
TCONS_00003304 lncRNA upstream 177792 2239211 ~ 2251036 (-) True XLOC_000945
TCONS_00002901 lncRNA upstream 433602 2495021 ~ 2502744 (-) False XLOC_000949
TCONS_00003305 lncRNA upstream 436454 2497873 ~ 2502743 (-) True XLOC_000949
TCONS_00001502 mRNA downstream 8831 2048047 ~ 2051599 (-) True XLOC_000941
TCONS_00001499 mRNA downstream 165708 1888541 ~ 1894722 (-) False XLOC_000939
TCONS_00001494 mRNA downstream 174836 1874427 ~ 1885594 (-) False XLOC_000939
TCONS_00001495 mRNA downstream 174914 1875070 ~ 1885516 (-) False XLOC_000939
TCONS_00001491 mRNA downstream 429031 1619153 ~ 1631399 (-) True XLOC_000937
TCONS_00001504 mRNA upstream 13094 2074513 ~ 2075529 (-) True XLOC_000943
TCONS_00001505 mRNA upstream 270218 2331637 ~ 2334254 (-) True XLOC_000946
TCONS_00001506 mRNA upstream 385577 2446996 ~ 2449395 (-) False XLOC_000947
TCONS_00001507 mRNA upstream 385606 2447025 ~ 2448592 (-) False XLOC_000947
TCONS_00001508 mRNA upstream 386632 2448051 ~ 2453185 (-) False XLOC_000947
TCONS_00001497 other downstream 132319 1884360 ~ 1928111 (-) False XLOC_000939
TCONS_00001500 other downstream 166425 1890171 ~ 1894005 (-) False XLOC_000939
TCONS_00001493 other downstream 174830 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001492 other downstream 185312 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001486 other downstream 744677 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001513 other upstream 1235948 3297367 ~ 3297451 (-) False XLOC_000952
TCONS_00001514 other upstream 1236065 3297484 ~ 3297570 (-) False XLOC_000952
TCONS_00001515 other upstream 1236184 3297603 ~ 3297755 (-) False XLOC_000952
TCONS_00001516 other upstream 1236429 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001517 other upstream 1236587 3298006 ~ 3298088 (-) False XLOC_000952