RNA id: TCONS_00001493


Basic Information

Item Value
RNA id TCONS_00001493
length 693
RNA type processed_transcript
GC content 0.42
exon number 7
gene id XLOC_000939
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1870861 ~ 1928225 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACATTCGTCGTAGGGTGTGTTTCCCCTGCGCGGCTATTTTTGGCTAATAGTATAGAGAAATAGCTTCATAAAGTACAAATTGTATGAAAATGTTCCTTCTAAGATACTCGGCTGCCGCCCTATGCTTCGTGTTCGCCTTAGGAGCAGTTTCAGGCAAAGAGGTGAAAGCAGTGGGTGATGAAGTTTCTTTTACTCCAGCCAGTCCTATCACTAAAGGAGCCAGCATTATATGGAAACACATAAGCACTAGTGGAGCTGTTACCAAGGCGATTGAATATGATGAAGATGGTGTAAATATCTGGAATAATAACTTCCTCGGCATCACAAGTCTTGATGAGAAGACTGGAAAAATCACTATAAAAAACTTAACTTTTTTCCACACTGGAGTTTACACCATTGACATCAACAGCAAAGAGCAGACACAAAGATTCAGCCTGACTGTTAAAGAGGAATCAAGCAGCGGACCTTGGTGGATCATTTTTCCTTTCCTCATCCTTGGTGGTATTGGGGCCTGCTTTGGTCTATATTGCAAAAACGGGAGTGTCAAGAAGTTTGTTGATGAACATGTTCCATGTAAAAAAGatCAAGGTAAAAAAGATGGTGAATCAGCGGGAAATGACCCTGCGAGCTCAACTCCCCTGAAAAACCAAACTCAAgCAAACTCAACTCTCCAGGGAAACCAAACtcaaggt

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-148 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000137332

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003296 lncRNA downstream 137444 1731517 ~ 1736564 (-) True XLOC_000938
TCONS_00003294 lncRNA downstream 290802 1555296 ~ 1583206 (-) False XLOC_000936
TCONS_00003295 lncRNA downstream 290802 1579918 ~ 1583206 (-) True XLOC_000936
TCONS_00002900 lncRNA downstream 295757 1572981 ~ 1578251 (-) False XLOC_000936
TCONS_00002898 lncRNA downstream 374615 1491941 ~ 1499393 (-) True XLOC_000935
TCONS_00001498 lncRNA upstream 2020 1887620 ~ 1928225 (-) False XLOC_000939
TCONS_00001501 lncRNA upstream 4571 1890171 ~ 1898407 (-) True XLOC_000939
TCONS_00003297 lncRNA upstream 115066 2000666 ~ 2005206 (-) False XLOC_000940
TCONS_00003298 lncRNA upstream 115066 2000666 ~ 2005508 (-) False XLOC_000940
TCONS_00003299 lncRNA upstream 115066 2000666 ~ 2005512 (-) False XLOC_000940
TCONS_00001491 mRNA downstream 242609 1619153 ~ 1631399 (-) True XLOC_000937
TCONS_00001490 mRNA downstream 246521 1618994 ~ 1627487 (-) False XLOC_000937
TCONS_00001489 mRNA downstream 471705 1362932 ~ 1402303 (-) True XLOC_000934
TCONS_00001483 mRNA downstream 874452 960209 ~ 999556 (-) False XLOC_000928
TCONS_00001499 mRNA upstream 2941 1888541 ~ 1894722 (-) False XLOC_000939
TCONS_00001502 mRNA upstream 162447 2048047 ~ 2051599 (-) True XLOC_000941
TCONS_00001503 mRNA upstream 174830 2060430 ~ 2061419 (-) True XLOC_000942
TCONS_00001504 mRNA upstream 188913 2074513 ~ 2075529 (-) True XLOC_000943
TCONS_00001505 mRNA upstream 446037 2331637 ~ 2334254 (-) True XLOC_000946
TCONS_00001486 other downstream 558255 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001485 other downstream 822951 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001476 other downstream 1248928 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001460 other downstream 1402083 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001442 other downstream 1720162 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001500 other upstream 4571 1890171 ~ 1894005 (-) False XLOC_000939
TCONS_00001513 other upstream 1411767 3297367 ~ 3297451 (-) False XLOC_000952
TCONS_00001514 other upstream 1411884 3297484 ~ 3297570 (-) False XLOC_000952
TCONS_00001515 other upstream 1412003 3297603 ~ 3297755 (-) False XLOC_000952
TCONS_00001516 other upstream 1412248 3297848 ~ 3297936 (-) False XLOC_000952

Expression Profile

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