Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00001483 |
| length | 2775 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 24 |
| gene id | XLOC_000928 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 960209 ~ 999556 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0043009 | chordate embryonic development | biological_process |
| GO:0043010 | camera-type eye development | biological_process |
| GO:0009058 | biosynthetic process | biological_process |
| GO:0046084 | adenine biosynthetic process | biological_process |
| GO:0006164 | purine nucleotide biosynthetic process | biological_process |
| GO:0009113 | purine nucleobase biosynthetic process | biological_process |
| GO:0006189 | 'de novo' IMP biosynthetic process | biological_process |
| GO:0043473 | pigmentation | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004637 | phosphoribosylamine-glycine ligase activity | molecular_function |
| GO:0004641 | phosphoribosylformylglycinamidine cyclo-ligase activity | molecular_function |
| GO:0004644 | phosphoribosylglycinamide formyltransferase activity | molecular_function |
| GO:0016874 | ligase activity | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| id | description |
|---|---|
| ko00230 | Purine metabolism |
| ko00670 | One carbon pool by folate |
| ko01523 | Antifolate resistance |
| id | description |
|---|---|
| ZDB-GENE-000616-14 | Predicted to enable phosphoribosylamine-glycine ligase activity and phosphoribosylformylglycinamidine cyclo-ligase activity. Acts upstream of or within camera-type eye development; chordate embryonic development; and pigmentation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Is expressed in several structures, including alar plate midbrain region; digestive system; nervous system; pigment cell; and yolk syncytial layer. Orthologous to human GART (phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase). |
| ensembl_id | ENSDART00000170884 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003289 | lncRNA | downstream | 180595 | 778575 ~ 779614 (-) | True | XLOC_000927 |
| TCONS_00001475 | lncRNA | downstream | 338030 | 620990 ~ 622179 (-) | False | XLOC_000923 |
| TCONS_00001467 | lncRNA | downstream | 446492 | 511771 ~ 513717 (-) | True | XLOC_000919 |
| TCONS_00001463 | lncRNA | downstream | 475621 | 479807 ~ 484588 (-) | False | XLOC_000918 |
| TCONS_00001454 | lncRNA | downstream | 614314 | 343617 ~ 345895 (-) | False | XLOC_000914 |
| TCONS_00003290 | lncRNA | upstream | 6381 | 1005937 ~ 1014866 (-) | True | XLOC_000929 |
| TCONS_00002897 | lncRNA | upstream | 144406 | 1143962 ~ 1253194 (-) | True | XLOC_000931 |
| TCONS_00003292 | lncRNA | upstream | 291619 | 1291175 ~ 1314969 (-) | False | XLOC_000932 |
| TCONS_00003291 | lncRNA | upstream | 291619 | 1291175 ~ 1314969 (-) | False | XLOC_000932 |
| TCONS_00003293 | lncRNA | upstream | 291619 | 1291175 ~ 1315753 (-) | False | XLOC_000932 |
| TCONS_00001482 | mRNA | downstream | 245583 | 691738 ~ 714626 (-) | True | XLOC_000926 |
| TCONS_00001481 | mRNA | downstream | 279093 | 673163 ~ 681116 (-) | True | XLOC_000925 |
| TCONS_00001480 | mRNA | downstream | 290492 | 658405 ~ 669717 (-) | True | XLOC_000924 |
| TCONS_00001478 | mRNA | downstream | 303516 | 621374 ~ 656693 (-) | False | XLOC_000923 |
| TCONS_00001489 | mRNA | upstream | 363376 | 1362932 ~ 1402303 (-) | True | XLOC_000934 |
| TCONS_00001490 | mRNA | upstream | 619438 | 1618994 ~ 1627487 (-) | False | XLOC_000937 |
| TCONS_00001491 | mRNA | upstream | 619597 | 1619153 ~ 1631399 (-) | True | XLOC_000937 |
| TCONS_00001494 | mRNA | upstream | 874871 | 1874427 ~ 1885594 (-) | False | XLOC_000939 |
| TCONS_00001495 | mRNA | upstream | 875514 | 1875070 ~ 1885516 (-) | False | XLOC_000939 |
| TCONS_00001476 | other | downstream | 335129 | 621025 ~ 625080 (-) | False | XLOC_000923 |
| TCONS_00001460 | other | downstream | 488284 | 467743 ~ 471925 (-) | True | XLOC_000917 |
| TCONS_00001442 | other | downstream | 806363 | 153238 ~ 153846 (-) | False | XLOC_000909 |
| TCONS_00001429 | other | downstream | 910374 | 47954 ~ 49835 (-) | False | XLOC_000904 |
| TCONS_00001421 | other | downstream | 915663 | 42204 ~ 44546 (-) | False | XLOC_000903 |
| TCONS_00001485 | other | upstream | 51385 | 1050941 ~ 1051057 (-) | True | XLOC_000930 |
| TCONS_00001486 | other | upstream | 314049 | 1313605 ~ 1315753 (-) | True | XLOC_000932 |
| TCONS_00001492 | other | upstream | 871305 | 1870861 ~ 1875118 (-) | False | XLOC_000939 |
| TCONS_00001493 | other | upstream | 874452 | 1874008 ~ 1885600 (-) | False | XLOC_000939 |
| TCONS_00001497 | other | upstream | 884804 | 1884360 ~ 1928111 (-) | False | XLOC_000939 |
