RNA id: TCONS_00002897


Basic Information

Item Value
RNA id TCONS_00002897
length 1786
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_000931
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1143962 ~ 1253194 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgCAAAATGAGTGTTTTCAACAGTGATGTGTGACCTGTTCTTGATAGGTTGAAACGAGACTCGCATttcagagccacacacacacagagagagagagagagagagagagagagagagagagagagagagagctgctgGATGCGATACTTTGATTCTGCTCACTGAGGTTTCAACTCGCGACACAAGCGGCTGTCCGTCACTTGCACCTGCTGAAAATGATcctcaaacacacctgtctgctCGGATTGCTGCTCTGCGGCTGTCAAGGTAAGTCATCTCTTATTATTCTCCTCATGACGTGGCCTAATGATcaacaacacaacaacattagCGCTGATCTGCTGTCAGTGTTGCGTTGAGTGAACTCGGTCTGAGAGCGATGCTAAAAAACCAGCTCATGAAAAATGAAGACGAATGTGTCGGATGGGAGATAATGCGTTTTAGATGTGTTTGTTCTGcgcttgatgttgactgatttggcTGTTCATAAATCAGTGAGGGTTATGAGTGAGAGACGTGTTCATTCGCTCATGTTCACTGATCAGGGAACTCTTGCTGTTATCAGAATCTGAATGAGCTTTGCTTGACTTGTGTGTGCAAATACACAACAGTCTTTTTGGGGGGGTTTACTGCTGCTCAGggtacatacagtgctcagttTTAGtgtgtaggggtgtttcccagtactgggttgcagctggaagggcatccactgcgtaaaacatgctgaaatagttggcggttcattccgttgtggtgacccctgctaaataagggactaaaccgaatgaaaatgaatgtatgaatgttttAGTGCATAAAGATCTGTAAACTGCcttcaaacaaacaaagggaTCCGTCTGTGTGTCTAATTCTCTGCACATCTCCATGCACAGTGTATCTACACTCTTCCAGATTCCCGCTGTCCGTGGAACACTTCGGATCTGGCTGGAAGTGTGAGATACACAGCACAAGTGAAAGTGGGTTAGTCTGTATTGTGCTGTAAATTGGATTTGAAAAATAACTCTTGAAAAGAGGTCACATCTCTTTTGAGGAGATTTTACAGTACGCCTCGTAACGTTCAAAGGCATGAAGATAATAAGCCTTACTTTTACTGACCCGTGCTCAGTGATATCTGTATTTCATAAACAGATCttatgtttgatttttattttaatgaaatcaCAACAAACACTTTCTTAATACTTTCAAATGTGTTACAAACTTGCTTTGCAATCAACAAACTTTGATTGGTTGACGTGCATTTGCTCATTTGATTATGAATATCTACcttttaaatactatttagagcagaggaataaataaatgaatgaataaataaataaataaataaataataaataaataaataaataaacaaaagtgcaaaaacaaataaatgaacaaatagacaaacaaatgcatgaataaacaaataaaatattagtgcagaaacaaacaaatgaacgcaAATGTAGCAAATAAACGcatgacaacataaaaaaatcattagtgcaaaaataaataaataaatgaacaaacaaataaacacataaatgaatgaataaataattaaataaataaattcaaatgctCATTGGATTATGAATATCTACCTTTTGATTACTATTTAGAgcagaagaataaataaataaataaataaaaacattagtacaaaaataaataaataaatgaacaaacaaataatcaaataaatgaacaaacaaataaacaaattaataaataaaaacattttgcaaaaaaataaacaaataaacaaacaaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0023061 signal release biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0003008 system process biological_process
GO:0001654 eye development biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003290 lncRNA downstream 129096 1005937 ~ 1014866 (-) True XLOC_000929
TCONS_00003289 lncRNA downstream 364348 778575 ~ 779614 (-) True XLOC_000927
TCONS_00001475 lncRNA downstream 521783 620990 ~ 622179 (-) False XLOC_000923
TCONS_00001467 lncRNA downstream 630245 511771 ~ 513717 (-) True XLOC_000919
TCONS_00001463 lncRNA downstream 659374 479807 ~ 484588 (-) False XLOC_000918
TCONS_00003292 lncRNA upstream 37981 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00003291 lncRNA upstream 37981 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00003293 lncRNA upstream 37981 1291175 ~ 1315753 (-) False XLOC_000932
TCONS_00001488 lncRNA upstream 96917 1350111 ~ 1352997 (-) False XLOC_000933
TCONS_00001487 lncRNA upstream 96917 1350111 ~ 1352997 (-) True XLOC_000933
TCONS_00001483 mRNA downstream 144406 960209 ~ 999556 (-) False XLOC_000928
TCONS_00001484 mRNA downstream 144406 973467 ~ 999556 (-) True XLOC_000928
TCONS_00001482 mRNA downstream 429336 691738 ~ 714626 (-) True XLOC_000926
TCONS_00001481 mRNA downstream 462846 673163 ~ 681116 (-) True XLOC_000925
TCONS_00001480 mRNA downstream 474245 658405 ~ 669717 (-) True XLOC_000924
TCONS_00001489 mRNA upstream 109738 1362932 ~ 1402303 (-) True XLOC_000934
TCONS_00001490 mRNA upstream 365800 1618994 ~ 1627487 (-) False XLOC_000937
TCONS_00001491 mRNA upstream 365959 1619153 ~ 1631399 (-) True XLOC_000937
TCONS_00001494 mRNA upstream 621233 1874427 ~ 1885594 (-) False XLOC_000939
TCONS_00001495 mRNA upstream 621876 1875070 ~ 1885516 (-) False XLOC_000939
TCONS_00001485 other downstream 92905 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001476 other downstream 518882 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001460 other downstream 672037 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001442 other downstream 990116 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001429 other downstream 1094127 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001486 other upstream 60411 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001492 other upstream 617667 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001493 other upstream 620814 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001497 other upstream 631166 1884360 ~ 1928111 (-) False XLOC_000939
TCONS_00001500 other upstream 636977 1890171 ~ 1894005 (-) False XLOC_000939

Expression Profile

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