RNA id: TCONS_00001482


Basic Information

Item Value
RNA id TCONS_00001482
length 2814
RNA type mRNA
GC content 0.58
exon number 8
gene id XLOC_000926
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 691738 ~ 714626 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTGGCTGGTGGTTTTGTTGTGTTGCGTTTTGGACGCCTCCGTTGCGCGTCCACCTGCGAACGCGTCTCTGCTCGCACCTGACGGAACCGTGCGCGCGGTGGACCGGATTTATCACGGGGGAGGAAAAGCCGGGTATCTTCTGTATCTGGACGAGCAGCGCTTTCAGCTGGATATGGAGCGGGATGAAACGATACTGGATCATCAGTTCAGCGCTGACGCGCCGCCGCGCAGGGAATGCGTTTACCGCGGGACCGTCAATTCAAACGCACAATCTCTAGCTGTTTTTAACCTGTGTGGTGGCGGGCTTGAAGGGTTTTTCGCGCTTGATCACTCCCGGTACACCATCACTCCTGTTATCCGAGCGAAAGGGCACGAGAATGACGTGCATATAGTCGAGGACGCCGACGCGACGCGCGCGCTTCATCTCTACACCCGGGAGCGCTTCAGTTTCGAGGCGATGCCTGAGCGGCACAGCTGCGGCACGCGGGACCGGAAAACGCGCAAGCACAAAAAAGAAAAGCACGGGCGCAGATGGTGGACAAAGTTTATCAAACCTGACGCTTCGCCGACGCGACGCAAACGCTCTGTGTCGCGCGCGCGGCACGTGGAGCTGCTGCTGGTCGCTGATGCTTCCATGACGAAGAAATACGGGAAGGACTTACAGCACTACCTGTTGACGCTCGCGTCCATCGCGTCCAAACTCTACGGTCACGCGAGCATCGAGAACCCCATCCGGCTGTCGGTGGTGAAAGTGGCGCTTCTGTCCGAGCACGAGAAGGGCATCGAGATCTCCAAAAACGCGGCCGCGACGCTCAAGAGCTTCTGCAAGTGGCAGAACCAGCAGAACCCTCTGGATGACGATCATCAGCATCACCATGACGCCGCGATCCTCTTCACCAGGCAGgatcTGTGCGGGCATCACTCGTGTGACACTCTGGGCATGGCGGATGTAGGAACTGTGTGTTCGCCAGAGAGGAGCTGTGCTATCATTGAGGACGACGGCCTGCACGCTGCCTTCACTGTGGCTCATGAGATCGGTCACCTGCTGGGTCTGTCCCACGACGACTCCAAGTTCTGTGAGGAGCGTTTCGGCTCCAGCGAGGACAAGCGGCTGATGTCCTCCATCCTGACCTCCATCGACGCCTCCAAACCCTGGAGCCGCTGCACCTCCAACACCATCACCGACTTCTTCGACGACGGAAACGCGGAGTGTCTCCTGGACGCTCCCCGTGTTCCTCTGCTGGGGCCGGAGGAGCTGCCGGGTCAGAGTTACGATGCGGTGCAGCAGTGCCGTCTGGCGTTCGGCTCCGAGTACAGTGTGTGTCCCGGGATGGACATCTGCGCTCGGCTGTGGTGCTCCGTCATCAGGAAGGGTCAGATGGTGTGTCTGACCAAGAAGCTGCCCGCTGTTGAGGGAACGCCATGTGGGAAGGGCAGGATCTGTCTGCAGGGCAAATGTGTGGACAAAACCAAAAAGAGACACTATTCGACATCTAAAGACGGCAGCTGGAGTTCGTGGGGAGCGTGGGGTTTGTGTTCTCGCTCGTGTGGTGGCGGCGTTCAGTTCGCGCAGCGGCTCTGCAATAATCCTGCACCCCGAAACAACGGACGATACTGCACCGGGAAAAGAGCTGTGTACAGATCCTGCAGCGTCACACCCTGCCCCACCacagGTAAGAGTTTCCGGCAGGAGCAGTGTGAGGTGCGTAACGGCCCCCAGACGGACCCTAAAGGCGTGAAGACGCTGGTGGAGTGGGTCCCCAAATTCGCCGGCGTTCTTCCCAAAGACGTGTGCAAACTCACCTGCAGAGCCAAGGGAACCGGATATTATGTGGTGTTTTCACAGAGGGTTGTTGACGGGACTGAGTGTCGTCCGTACAGCAGCTCGGTGTGTGTGAAGGGGAAGTGTGTTCGCACCGGCTGCGACGGCATCATCGGATCCAAACTCCAGTACGACAAGTGTGGGATCTGCGGAGGAGACGGAAACAGCTGCATTAAAGTGGCTGGAAACTTCACCAAGAAGAGTAAGGGCTACACTGACGTGGTGAAGATTCCCGAGGGTTCGACTCATCTGAAGGTGCGTCAGTATAAAGCTAAAGGCCAGTCGCGCTACACAGCATACCTAGCGCTGCGGCGACCCGGCGGAGATTATCTGCTGAACGGCAAACTGATGATCTCCACCTCTGAAACCATCATCCCGCTCAACGGCTCTGTCCTCAACTACACCGGCTGGAGCCAGCGGGACGAGGCTTTCCACAGCATGGGCCCCGCCGCCCTCCAGGAGAGCCTGTTAGTGCAGATTTTATCCACCGATGCTAAAAAACCGCTGGATATACGCTACAGCTTTTTCATGCCTCGCAAAACGCCACTCCCAGCCAGGACCTCCCCTGAAGCTCCGCCCAGAATGTCGCTTGAAGCTCCGCCCAGAATGTCACTTGAAGCTCCGCCCAGGATGTCACTTGAAGCTCCACCCAGGATGGCTCCTGAAGCTCTGCCCAGGACATCCCCAGAAGCTCCGCCCAGAATACCACCTGAAGCTCCACCTAGGACGCCTCCTGAAGCTCCGCCCACTGTCGCTTCTTTATCGTCAGCAGAACTTGTAACGTTTACATCTGACGTTCCTCCAACGACGGAGAGTCCGAAATTCCCGCGCTGGCTGACGGGCCCCTGGATGAGCTGCTCCAGAACTTGCGATACGGGCTGGCAGAGTCGCACAGTTCAGTGTAAAGACGCTAACGGGAAACTGTCTAAAAACTGCCCGCTCAGCGCCCGGCCGTCAGCCTTCAAACACTGCCTGATTAAAAAGTGTTGA

Function

GO: NA

KEGG:

id description
ko01002 Peptidases and inhibitors

Ensembl:

ensembl_id ENSDART00000161072

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001475 lncRNA downstream 69559 620990 ~ 622179 (-) False XLOC_000923
TCONS_00001467 lncRNA downstream 178021 511771 ~ 513717 (-) True XLOC_000919
TCONS_00001463 lncRNA downstream 207150 479807 ~ 484588 (-) False XLOC_000918
TCONS_00001454 lncRNA downstream 345843 343617 ~ 345895 (-) False XLOC_000914
TCONS_00002896 lncRNA downstream 480925 209129 ~ 210813 (-) True XLOC_000912
TCONS_00003289 lncRNA upstream 63949 778575 ~ 779614 (-) True XLOC_000927
TCONS_00003290 lncRNA upstream 291311 1005937 ~ 1014866 (-) True XLOC_000929
TCONS_00002897 lncRNA upstream 429336 1143962 ~ 1253194 (-) True XLOC_000931
TCONS_00003292 lncRNA upstream 576549 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00003291 lncRNA upstream 576549 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00001481 mRNA downstream 10622 673163 ~ 681116 (-) True XLOC_000925
TCONS_00001480 mRNA downstream 22021 658405 ~ 669717 (-) True XLOC_000924
TCONS_00001478 mRNA downstream 35045 621374 ~ 656693 (-) False XLOC_000923
TCONS_00001477 mRNA downstream 35045 621374 ~ 656693 (-) False XLOC_000923
TCONS_00001479 mRNA downstream 58382 626550 ~ 633356 (-) True XLOC_000923
TCONS_00001483 mRNA upstream 245583 960209 ~ 999556 (-) False XLOC_000928
TCONS_00001484 mRNA upstream 258841 973467 ~ 999556 (-) True XLOC_000928
TCONS_00001489 mRNA upstream 648306 1362932 ~ 1402303 (-) True XLOC_000934
TCONS_00001490 mRNA upstream 904368 1618994 ~ 1627487 (-) False XLOC_000937
TCONS_00001491 mRNA upstream 904527 1619153 ~ 1631399 (-) True XLOC_000937
TCONS_00001476 other downstream 66658 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001460 other downstream 219813 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001442 other downstream 537892 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001429 other downstream 641903 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 647192 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001485 other upstream 336315 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 598979 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001492 other upstream 1156235 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001493 other upstream 1159382 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001497 other upstream 1169734 1884360 ~ 1928111 (-) False XLOC_000939

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_05478688_05502027.mRNA True 5201 mRNA 0.49 9 CI01000299 5477482 ~ 5503268 (-)
bowfin (Amia calva) AMCG00014100 True 3849 mRNA 0.61 8 CM030128.1 1799682 ~ 1813298 (+)